# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.85e-10		
2gcxA	75	6.61e-10		
1fx7A	230	0.000266	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000361		
2dtrA	226	0.003557	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01978		
2dtr	226	0.02002		
1bymA	97	2.126	b.34.1.2	24458
1h75A	81	6.714	c.47.1.1	60716
1mdoA	393	8.056	c.67.1.4	79013
2c81A	418	8.073		
1rhs	296	8.489		
1vkjA	285	10.03	c.37.1.5	108666
3bn1A	373	10.51		
1e0cA	271	13.61	c.46.1.2,c.46.1.2	32717,32718
1o69A	394	17.74	c.67.1.4	92560
1uarA	285	18.54	c.46.1.2,c.46.1.2	107762,107763
1s68A	249	20.71	d.142.2.4	98591
1rhsA	296	22.34	c.46.1.2,c.46.1.2	32703,32704
1elqA	390	22.74	c.67.1.3	34436
1a8i	842	27.46		
1pbeA	394	27.62	c.3.1.2,d.16.1.2	30338,37869
1xhlA	297	29.16	c.2.1.2	109591
2ogeA	399	29.91		
2graA	277	30.03		
1eluA	390	31.59	c.67.1.3	34434
1b9hA	388	32.49	c.67.1.4	34488
1wohA	305	33.24	c.42.1.1	109446
2pwyA	258	33.44		
2bb3A	221	34.35	c.90.1.1	128257
1va0A	239	34.54	c.90.1.1	119899
1ne2A	200	35.19	c.66.1.32	85586
1z3eB	73	36.51	a.60.3.1	124401
2h1rA	299	38.05		
1xkqA	280	38.86	c.2.1.2	115417
1nrvA	105	41.54	d.93.1.1	86126
2vsgA	358	42.44	h.4.1.1	45780
1y8xB	98	43.70		
2d1hA	109	47.16	a.4.5.50	131125
2fa1A	160	49.34	d.190.1.2	133182
1sfxA	109	49.35	a.4.5.50	105505
1x8mA	288	53.16	b.82.1.13	109516
1cbfA	285	54.80	c.90.1.1	35587
1opdA	85	55.93	d.94.1.1	40560
1pchA	88	55.97	d.94.1.1	40564
1lb2B	84	56.43	a.60.3.1	77871
1yemA	179	60.73	d.63.1.2	116646
2rfaA	232	66.14		
2qh8A	302	66.23		
2ghaA	382	66.99		
1hrkA	359	67.87	c.92.1.1	61228
2pkhA	148	68.03		
2j85A	122	68.07	d.321.1.1	138133
1z2mA	155	71.24	d.15.1.1,d.15.1.1	124387,124388
2nygA	273	71.51		
2z6rA	265	72.55		
1wb4A	297	73.38	c.69.1.2	120827
1kmvA	186	74.26	c.71.1.1	72757
3cnvA	162	80.49		
2ccqA	99	81.23	d.314.1.1	130252
1xzzA	246	81.84		
1wc2A	181	83.66		
1y51A	88	83.91		
1jyhA	157	84.73	d.60.1.3	71956
1pch	88	85.77		
2fziA	206	86.05	c.71.1.1	134448
1ve2A	235	86.63	c.90.1.1	120008
2qwvA	208	88.46		
1p3jA	217	88.81	c.37.1.1,g.41.2.1	94022,94023