# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.83e-10		
2gcxA	75	6.87e-10		
1fx7A	230	0.000310	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000434		
2dtrA	226	0.003313	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.01559		
1qw1A	121	0.02228		
1bymA	97	4.136	b.34.1.2	24458
1mdoA	393	6.633	c.67.1.4	79013
1rhs	296	6.955		
2c81A	418	7.285		
1h75A	81	7.380	c.47.1.1	60716
3bn1A	373	12.16		
1e0cA	271	13.24	c.46.1.2,c.46.1.2	32717,32718
1s68A	249	13.99	d.142.2.4	98591
1uarA	285	18.21	c.46.1.2,c.46.1.2	107762,107763
1vkjA	285	18.27	c.37.1.5	108666
1rhsA	296	20.43	c.46.1.2,c.46.1.2	32703,32704
1elqA	390	20.93	c.67.1.3	34436
1o69A	394	22.43	c.67.1.4	92560
1ne2A	200	26.54	c.66.1.32	85586
1va0A	239	28.72	c.90.1.1	119899
1a8i	842	29.17		
2ogeA	399	29.59		
2bb3A	221	30.57	c.90.1.1	128257
2h1rA	299	31.79		
1xhlA	297	32.70	c.2.1.2	109591
1eluA	390	33.10	c.67.1.3	34434
2graA	277	34.80		
1wohA	305	35.33	c.42.1.1	109446
2pwyA	258	37.47		
1b9hA	388	37.56	c.67.1.4	34488
1z3eB	73	39.67	a.60.3.1	124401
1y8xB	98	40.62		
1sfxA	109	42.25	a.4.5.50	105505
1cbfA	285	43.88	c.90.1.1	35587
2fa1A	160	46.02	d.190.1.2	133182
1xkqA	280	47.57	c.2.1.2	115417
2d1hA	109	51.41	a.4.5.50	131125
1hrkA	359	56.48	c.92.1.1	61228
2j85A	122	59.55	d.321.1.1	138133
1wb4A	297	60.52	c.69.1.2	120827
2ccqA	99	61.35	d.314.1.1	130252
1lb2B	84	61.78	a.60.3.1	77871
1opdA	85	62.15	d.94.1.1	40560
2pkhA	148	62.89		
1ve2A	235	67.98	c.90.1.1	120008
3cnvA	162	71.50		
2qh8A	302	73.30		
2ghaA	382	73.36		
2pieA	138	73.98		
2nygA	273	74.77		
2vsgA	358	75.65	h.4.1.1	45780
1pchA	88	75.84	d.94.1.1	40564
2qwvA	208	76.73		
2z0jA	237	78.67		
2z6rA	265	78.89		
2oggA	152	79.07		
1nrvA	105	80.04	d.93.1.1	86126
1kmvA	186	80.62	c.71.1.1	72757
1p3jA	217	85.32	c.37.1.1,g.41.2.1	94022,94023
1pbeA	394	86.11	c.3.1.2,d.16.1.2	30338,37869
2fziA	206	87.51	c.71.1.1	134448
2p19A	149	89.65