# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	9.55e-10		
2gcxA	75	2.52e-09		
1fx7A	230	0.000557	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000590		
2dtrA	226	0.004168	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.01723		
1qw1A	121	0.02106		
1bymA	97	4.702	b.34.1.2	24458
1h75A	81	6.572	c.47.1.1	60716
1rhs	296	7.179		
1mdoA	393	7.830	c.67.1.4	79013
2c81A	418	11.03		
1e0cA	271	12.69	c.46.1.2,c.46.1.2	32717,32718
1s68A	249	14.72	d.142.2.4	98591
1a8i	842	16.23		
1uarA	285	16.39	c.46.1.2,c.46.1.2	107762,107763
3bn1A	373	16.77		
1elqA	390	18.88	c.67.1.3	34436
1rhsA	296	19.27	c.46.1.2,c.46.1.2	32703,32704
1o69A	394	19.84	c.67.1.4	92560
1vkjA	285	24.40	c.37.1.5	108666
1ne2A	200	28.70	c.66.1.32	85586
1eluA	390	28.99	c.67.1.3	34434
2ogeA	399	29.98		
2pwyA	258	31.50		
2bb3A	221	32.11	c.90.1.1	128257
1wohA	305	35.52	c.42.1.1	109446
1y8xB	98	37.39		
1va0A	239	38.08	c.90.1.1	119899
1z3eB	73	40.09	a.60.3.1	124401
1b9hA	388	42.35	c.67.1.4	34488
2h1rA	299	42.56		
2graA	277	47.45		
1wb4A	297	47.54	c.69.1.2	120827
1cbfA	285	48.23	c.90.1.1	35587
2fa1A	160	50.04	d.190.1.2	133182
1xhlA	297	50.36	c.2.1.2	109591
1sfxA	109	53.52	a.4.5.50	105505
2pieA	138	54.83		
1hrkA	359	55.24	c.92.1.1	61228
2qh8A	302	55.92		
2qwvA	208	57.68		
2vsgA	358	57.73	h.4.1.1	45780
1opdA	85	58.25	d.94.1.1	40560
2j85A	122	59.41	d.321.1.1	138133
1ve2A	235	59.84	c.90.1.1	120008
2ccqA	99	62.86	d.314.1.1	130252
2ghaA	382	63.43		
1xkqA	280	65.49	c.2.1.2	115417
1pchA	88	67.87	d.94.1.1	40564
2nygA	273	68.37		
2d1hA	109	69.00	a.4.5.50	131125
2pkhA	148	69.63		
1lb2B	84	72.60	a.60.3.1	77871
1x8mA	288	73.17	b.82.1.13	109516
2fziA	206	75.61	c.71.1.1	134448
2rfaA	232	76.10		
3cnvA	162	77.68		
1nrvA	105	79.05	d.93.1.1	86126
2oggA	152	79.53		
2z0jA	237	80.64		
1kmvA	186	83.05	c.71.1.1	72757
1wc2A	181	89.00