# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	4.46e-10		
2h3jA	75	7.25e-10		
1qw1A	121	0.002293		
1fx7A	230	0.004965	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.007677	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.008539		
1bymA	97	2.402	b.34.1.2	24458
1rhs	296	2.888		
1uarA	285	2.908	c.46.1.2,c.46.1.2	107762,107763
2dtr	226	3.786		
1h75A	81	4.186	c.47.1.1	60716
1e0cA	271	4.981	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	5.605	c.46.1.2,c.46.1.2	32703,32704
1ne2A	200	11.51	c.66.1.32	85586
1z3eB	73	12.99	a.60.3.1	124401
1lb2B	84	16.69	a.60.3.1	77871
1dv0A	47	22.34	a.5.2.1	16289
1vekA	84	22.76	a.5.2.1	113636
1y8xB	98	23.27		
3bpdA	100	27.10		
3bn1A	373	32.43		
1y8qB	640	33.27		
1ptfA	88	36.36	d.94.1.1	40549
1go3F	107	37.70	a.60.8.2	65407
2qh8A	302	37.90		
1pchA	88	42.92	d.94.1.1	40564
1vg5A	73	43.31	a.5.2.1	113640
2pieA	138	46.55		
2h1rA	299	49.16		
1opdA	85	50.98	d.94.1.1	40560
1qamA	244	53.14	c.66.1.24	34220
1v4vA	376	53.20	c.87.1.3	100313
1cbfA	285	53.73	c.90.1.1	35587
1ptf	88	54.16		
1pch	88	54.75		
1sphA	88	57.64	d.94.1.1	40544
1pbeA	394	57.97	c.3.1.2,d.16.1.2	30338,37869
2oqoA	200	59.10		
1zelA	298	59.11		
1y51A	88	66.53		
1va0A	239	74.60	c.90.1.1	119899
1opd	85	80.12		
1ci4A	89	83.84	a.60.5.1	17970
2c81A	418	84.60		
1vkjA	285	84.82	c.37.1.5	108666
2vsgA	358	85.91	h.4.1.1	45780
1pgyA	47	87.99	a.5.2.1	94696
2d1hA	109	89.07	a.4.5.50	131125
1sfxA	109	89.16	a.4.5.50	105505