# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.11e-10		
2gcxA	75	4.05e-10		
1fx7A	230	0.000152	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000260		
2dtrA	226	0.002581	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.01167		
1qw1A	121	0.01872		
1rhs	296	2.501		
1bymA	97	3.727	b.34.1.2	24458
1h75A	81	5.494	c.47.1.1	60716
1rhsA	296	5.726	c.46.1.2,c.46.1.2	32703,32704
1mdoA	393	6.855	c.67.1.4	79013
2c81A	418	7.793		
1e0cA	271	8.724	c.46.1.2,c.46.1.2	32717,32718
1o69A	394	10.51	c.67.1.4	92560
1vkjA	285	11.67	c.37.1.5	108666
1b9hA	388	11.84	c.67.1.4	34488
1ne2A	200	12.02	c.66.1.32	85586
3bn1A	373	15.44		
1s68A	249	16.80	d.142.2.4	98591
1wohA	305	21.86	c.42.1.1	109446
2ogeA	399	23.74		
2fa1A	160	24.35	d.190.1.2	133182
2graA	277	25.51		
1hrkA	359	28.69	c.92.1.1	61228
1elqA	390	30.02	c.67.1.3	34436
3cnvA	162	30.98		
2h1rA	299	33.70		
1uarA	285	34.52	c.46.1.2,c.46.1.2	107762,107763
2nygA	273	37.88		
1va0A	239	38.39	c.90.1.1	119899
1pbeA	394	38.72	c.3.1.2,d.16.1.2	30338,37869
1z3eB	73	39.13	a.60.3.1	124401
1xhlA	297	39.63	c.2.1.2	109591
1cbfA	285	39.66	c.90.1.1	35587
2d1hA	109	40.22	a.4.5.50	131125
1nrvA	105	40.62	d.93.1.1	86126
1a8i	842	41.63		
2ikkA	173	43.34		
2p19A	149	44.99		
2j85A	122	47.68	d.321.1.1	138133
1sfxA	109	48.02	a.4.5.50	105505
2px2A	269	48.90		
2pkhA	148	49.10		
1z2mA	155	50.46	d.15.1.1,d.15.1.1	124387,124388
1eluA	390	58.32	c.67.1.3	34434
1wb4A	297	58.91	c.69.1.2	120827
1x8mA	288	60.94	b.82.1.13	109516
2oggA	152	62.02		
1xkqA	280	63.90	c.2.1.2	115417
1kafA	108	66.16	d.199.1.1	68372
1zc1A	208	66.28		
1pm1X	180	67.86	b.60.1.1	104189
2vsgA	358	68.65	h.4.1.1	45780
2qwvA	208	68.74		
1vekA	84	69.71	a.5.2.1	113636
2pwyA	258	71.05		
2ooiA	162	71.16		
1lb2B	84	71.91	a.60.3.1	77871
2etjA	250	78.87	c.55.3.1	132360
2z0jA	237	80.39		
2nwiA	172	84.78		
1ydgA	211	88.72	c.23.5.8	116614
1xzzA	246	89.56