# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 8.32e-12 2gcxA 75 2.82e-11 1fx7A 230 3.53e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.000587 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.001098 2qq9A 226 0.005004 1qw1A 121 0.008094 1bymA 97 1.303 b.34.1.2 24458 2fa1A 160 2.209 d.190.1.2 133182 1p57A 114 3.390 d.170.1.2 94125 2hpkA 208 4.092 2prbA 196 4.155 1f46A 140 5.850 d.129.4.1 59643 1h75A 81 6.645 c.47.1.1 60716 1eejA 216 6.843 c.47.1.9,d.17.3.1 33057,38071 2gwmA 200 8.313 1rhsA 296 9.599 c.46.1.2,c.46.1.2 32703,32704 1gteA 1025 9.696 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2qwvA 208 11.69 2azpA 318 11.77 1t9bA 677 13.38 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2vduE 254 13.65 2bb3A 221 13.78 c.90.1.1 128257 3cddA 361 18.35 1xm9A 457 20.21 a.118.1.24 122142 1kjqA 391 21.28 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2jmwA 86 21.94 1qamA 244 22.27 c.66.1.24 34220 1wxxA 382 22.33 b.122.1.9,c.66.1.51 121418,121419 2dt4A 143 22.61 2rk0A 136 23.11 1z3eB 73 24.03 a.60.3.1 124401 2q01A 497 24.38 2i44A 324 25.38 2epgA 487 26.05 1vi6A 208 26.50 c.23.15.1 100736 2olnA 397 26.77 1e0cA 271 26.89 c.46.1.2,c.46.1.2 32717,32718 2fziA 206 27.39 c.71.1.1 134448 2uyoA 310 27.61 2izzA 322 27.88 2ogeA 399 28.09 1zkcA 197 28.26 b.62.1.1 125182 1go3F 107 28.61 a.60.8.2 65407 1nrvA 105 28.67 d.93.1.1 86126 2qjcA 262 28.84 3cnvA 162 29.41 2oy0A 262 29.51 2ywwA 149 29.64 1rhs 296 30.28 2qedA 258 30.46 3cumA 302 30.72 2obwA 258 30.97 2p19A 149 31.04 2etjA 250 31.06 c.55.3.1 132360 2pkhA 148 31.46 1fc6A 388 32.54 b.36.1.3,c.14.1.2 64738,64739 1pqhA 143 32.73 b.52.2.1 95017 2f8yA 223 32.86 2ikkA 173 33.14 1j99A 293 33.82 c.37.1.5 71618 1gegA 256 33.95 c.2.1.2 29888 2depA 356 34.60 1lrzA 426 35.18 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1zvkA 358 35.58 1u3wA 374 35.70 b.35.1.2,c.2.1.1 113013,113014 2ooiA 162 36.69 1uby 367 36.85 1eudA 311 37.11 c.2.1.8,c.23.4.1 30312,31140 2pii 112 37.36 2dnjA 260 38.14 d.151.1.1 41790 1jc4A 148 38.25 d.32.1.4 62863 1pbeA 394 38.28 c.3.1.2,d.16.1.2 30338,37869 1mpyA 307 39.53 d.32.1.3,d.32.1.3 38508,38509 2cb0A 333 41.36 1scuA 288 41.57 c.2.1.8,c.23.4.1 30307,31135 1e4eA 343 41.57 c.30.1.2,d.142.1.1 59221,59222 1xvlA 321 42.89 c.92.2.2 122380 1k1eA 180 48.28 c.108.1.5 67995 2h1rA 299 48.49 1u0tA 307 50.21 e.52.1.1 107567 1hbq 183 51.06 1u32A 293 51.15 d.159.1.3 107631 2nygA 273 53.10 2hjsA 340 53.18 c.2.1.3,d.81.1.1 136547,136548 1xsjA 778 53.39 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1tkiA 321 54.13 d.144.1.7 41638 1ty0A 211 54.42 b.40.2.2,d.15.6.1 107440,107441 1v9tA 166 58.55 b.62.1.1 108451 2o2yA 349 58.79 c.2.1.2 138894 2pwyA 258 59.69 1f8fA 371 60.30 b.35.1.2,c.2.1.1 83246,83247 1yemA 179 60.41 d.63.1.2 116646 1xhlA 297 61.18 c.2.1.2 109591 1z9tA 255 61.53 1spxA 278 61.61 c.2.1.2 98958 3cq9A 227 62.53 1u9iA 519 62.78 c.37.1.11,c.37.1.11 119637,119638 2oggA 152 62.83 1ve2A 235 63.00 c.90.1.1 120008 1jb0A 755 64.00 f.29.1.1 62820 1np3A 338 64.02 a.100.1.2,c.2.1.6 85946,85947 2c3zA 222 64.10 1zzmA 259 64.16 c.1.9.12 125911 2f1kA 279 65.10 a.100.1.12,c.2.1.6 132772,132773 1lb2B 84 65.21 a.60.3.1 77871 2ap1A 327 65.64 c.55.1.10,c.55.1.10 127108,127109 1kdvA 370 66.27 c.41.1.2 68486 1nrwA 288 67.19 c.108.1.10 86128 2raqA 97 67.29 1uasA 362 67.41 b.71.1.1,c.1.8.1 88388,88389 1fjmA 330 67.72 d.159.1.3 42082 1yloA 348 68.04 b.49.3.1,c.56.5.4 123659,123660 1nrzA 164 69.85 c.38.1.1 86131 1wohA 305 71.71 c.42.1.1 109446 1sfxA 109 71.89 a.4.5.50 105505 1lopA 164 71.91 b.62.1.1 27510 1g0uL 241 72.00 d.153.1.4 41894 1sjgA 112 72.32 b.33.1.1 105647 2d1hA 109 73.65 a.4.5.50 131125 2q3wA 111 74.29 b.33.1.1 139813 1nxzA 246 75.74 b.122.1.2,c.116.1.5 86391,86392 1t1gA 364 76.55 c.41.1.2 106246 1aukA 489 77.09 c.76.1.2 35030 1wrbA 253 77.11 c.37.1.19 121192 2f1nA 262 78.34 d.151.1.1 132782 2rfqA 394 78.54 2oegA 505 78.54 2r6uA 148 78.82 2qxvA 361 79.72 1zc1A 208 80.04 1lkdA 297 81.34 d.32.1.3,d.32.1.3 78059,78060 3cnqP 80 81.81 1im8A 244 81.92 c.66.1.14 66212 2bm0A 691 82.69 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2ra6A 166 83.07 1nmmB 286 83.31 c.68.1.2 80662 1qh5A 260 84.87 d.157.1.2 42057 1jksA 294 85.77 d.144.1.7 71710 2glwA 92 86.95 1va0A 239 87.57 c.90.1.1 119899 1y8cA 246 88.05 c.66.1.43 116563 2eenA 183 88.88 2ql3A 209 88.91 1krhA 338 89.99 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893