# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.09e-12		
2gcxA	75	1.33e-11		
1fx7A	230	3.59e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	7.22e-05		
2dtrA	226	0.000479	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.005060		
1qw1A	121	0.005330		
1rhs	296	1.975		
1h75A	81	2.680	c.47.1.1	60716
1bymA	97	2.737	b.34.1.2	24458
1rhsA	296	3.899	c.46.1.2,c.46.1.2	32703,32704
1mdoA	393	8.060	c.67.1.4	79013
1e0cA	271	8.544	c.46.1.2,c.46.1.2	32717,32718
2c81A	418	9.124		
1vkjA	285	11.17	c.37.1.5	108666
1s68A	249	13.85	d.142.2.4	98591
1b9hA	388	14.56	c.67.1.4	34488
1ne2A	200	15.09	c.66.1.32	85586
1va0A	239	17.88	c.90.1.1	119899
1o69A	394	19.44	c.67.1.4	92560
1wohA	305	20.03	c.42.1.1	109446
1cbfA	285	20.05	c.90.1.1	35587
3bn1A	373	21.19		
1z3eB	73	25.30	a.60.3.1	124401
1uarA	285	26.76	c.46.1.2,c.46.1.2	107762,107763
2h1rA	299	29.40		
1elqA	390	30.03	c.67.1.3	34436
2ogeA	399	30.84		
1xhlA	297	31.40	c.2.1.2	109591
2j85A	122	31.61	d.321.1.1	138133
2fa1A	160	32.16	d.190.1.2	133182
3cnvA	162	33.23		
1nrvA	105	33.98	d.93.1.1	86126
2pwyA	258	35.51		
2px2A	269	36.23		
2ikkA	173	37.75		
2p19A	149	39.46		
2qwvA	208	40.42		
2graA	277	40.47		
2pkhA	148	40.72		
2vsgA	358	42.92	h.4.1.1	45780
1xkqA	280	43.68	c.2.1.2	115417
1hrkA	359	44.52	c.92.1.1	61228
1zccA	248	45.73	c.1.18.3	124903
1x8mA	288	45.74	b.82.1.13	109516
2d1hA	109	46.55	a.4.5.50	131125
1pjqA	457	46.60	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1sfxA	109	47.49	a.4.5.50	105505
1vekA	84	48.49	a.5.2.1	113636
1lb2B	84	52.95	a.60.3.1	77871
1ve2A	235	53.45	c.90.1.1	120008
2z0jA	237	53.56		
1wc2A	181	54.12		
2nygA	273	59.87		
2py6A	409	60.80		
1pbeA	394	61.03	c.3.1.2,d.16.1.2	30338,37869
2ooiA	162	62.66		
1z2mA	155	65.39	d.15.1.1,d.15.1.1	124387,124388
1y56A	493	65.71		
1a8i	842	65.96		
2pieA	138	70.95		
3bpdA	100	72.60		
2bwbA	46	73.56	a.5.2.1	129329
1pm1X	180	73.66	b.60.1.1	104189
1pchA	88	74.01	d.94.1.1	40564
2fziA	206	74.35	c.71.1.1	134448
2bb3A	221	75.07	c.90.1.1	128257
1eluA	390	76.02	c.67.1.3	34434
2qh8A	302	76.44		
1opdA	85	77.50	d.94.1.1	40560
1zc1A	208	77.75		
2oggA	152	79.35		
2v8tA	302	80.80		
1l6wA	220	84.27	c.1.10.1	73632
1wb4A	297	87.19	c.69.1.2	120827
1x7gA	261	87.87	c.2.1.2	114929
1dv0A	47	89.39	a.5.2.1	16289
2ccqA	99	89.92	d.314.1.1	130252