# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.37e-10		
2gcxA	75	3.21e-10		
2qq9A	226	0.000464		
1fx7A	230	0.000567	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.002283	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01239		
2dtr	226	0.01611		
1bymA	97	0.5863	b.34.1.2	24458
1h75A	81	9.119	c.47.1.1	60716
1rhs	296	10.43		
2c81A	418	12.13		
1e0cA	271	18.35	c.46.1.2,c.46.1.2	32717,32718
3bn1A	373	19.96		
1rhsA	296	20.99	c.46.1.2,c.46.1.2	32703,32704
1mdoA	393	23.18	c.67.1.4	79013
1uarA	285	23.49	c.46.1.2,c.46.1.2	107762,107763
1wohA	305	32.04	c.42.1.1	109446
2pwyA	258	35.69		
1vkjA	285	36.10	c.37.1.5	108666
1y8xB	98	37.50		
1z3eB	73	38.89	a.60.3.1	124401
2fa1A	160	39.15	d.190.1.2	133182
3cnvA	162	40.45		
2pkhA	148	42.14		
1r1gA	31	44.89	g.3.7.2	96816
2ogeA	399	45.06		
1hrkA	359	45.48	c.92.1.1	61228
2h1rA	299	46.32		
1x8mA	288	51.44	b.82.1.13	109516
2bb3A	221	51.53	c.90.1.1	128257
1pbeA	394	53.01	c.3.1.2,d.16.1.2	30338,37869
1wc2A	181	54.39		
1s68A	249	54.40	d.142.2.4	98591
1ne2A	200	54.54	c.66.1.32	85586
1sfxA	109	55.74	a.4.5.50	105505
2z6rA	265	58.74		
1elqA	390	61.62	c.67.1.3	34436
2p19A	149	62.95		
2vsgA	358	63.00	h.4.1.1	45780
2pieA	138	64.95		
1o69A	394	65.37	c.67.1.4	92560
1z2mA	155	67.63	d.15.1.1,d.15.1.1	124387,124388
2etjA	250	67.99	c.55.3.1	132360
1xkqA	280	68.23	c.2.1.2	115417
1cbfA	285	68.46	c.90.1.1	35587
2py6A	409	69.54		
2yvlA	248	72.99		
1xhlA	297	73.07	c.2.1.2	109591
2oggA	152	73.92		
2ggtA	164	77.68	c.47.1.10	135156
2ev1A	222	77.86		
2px2A	269	79.38		
1yt8A	539	80.06	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2rfaA	232	81.58		
1lb2B	84	82.07	a.60.3.1	77871
2ikkA	173	82.38		
1va0A	239	82.69	c.90.1.1	119899
2qh8A	302	87.42