# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	4.46e-09		
2h3jA	75	4.65e-09		
1fx7A	230	0.000450	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.001644		
2dtrA	226	0.005076	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01385		
2dtr	226	0.1268		
1bymA	97	1.226	b.34.1.2	24458
2c81A	418	8.684		
1h75A	81	8.839	c.47.1.1	60716
1rhs	296	12.65		
1mdoA	393	14.09	c.67.1.4	79013
3bn1A	373	17.18		
1y8xB	98	19.14		
1e0cA	271	19.60	c.46.1.2,c.46.1.2	32717,32718
1elqA	390	21.76	c.67.1.3	34436
1rhsA	296	24.61	c.46.1.2,c.46.1.2	32703,32704
1eluA	390	31.23	c.67.1.3	34434
2vsgA	358	31.30	h.4.1.1	45780
1ne2A	200	31.92	c.66.1.32	85586
2qh8A	302	31.94		
2px2A	269	32.68		
1uarA	285	35.01	c.46.1.2,c.46.1.2	107762,107763
2ogeA	399	39.08		
1z3eB	73	40.92	a.60.3.1	124401
1b9hA	388	41.35	c.67.1.4	34488
1s68A	249	41.70	d.142.2.4	98591
1o69A	394	45.01	c.67.1.4	92560
2pwyA	258	46.70		
1z2mA	155	47.05	d.15.1.1,d.15.1.1	124387,124388
1x8mA	288	51.09	b.82.1.13	109516
1hrkA	359	54.11	c.92.1.1	61228
1vekA	84	55.73	a.5.2.1	113636
1pchA	88	57.58	d.94.1.1	40564
1xhlA	297	58.34	c.2.1.2	109591
1xkqA	280	58.44	c.2.1.2	115417
2nygA	273	60.77		
1opdA	85	63.55	d.94.1.1	40560
1ptfA	88	66.24	d.94.1.1	40549
1dv0A	47	66.88	a.5.2.1	16289
1sfxA	109	67.20	a.4.5.50	105505
1lb2B	84	68.27	a.60.3.1	77871
2ev1A	222	68.81		
1pbeA	394	69.63	c.3.1.2,d.16.1.2	30338,37869
2yvlA	248	71.63		
1wohA	305	72.17	c.42.1.1	109446
2pkhA	148	73.31		
2fa1A	160	74.03	d.190.1.2	133182
1ydgA	211	74.29	c.23.5.8	116614
1r1gA	31	74.61	g.3.7.2	96816
3cnvA	162	76.33		
2dsjA	423	77.09		
1pch	88	77.33		
1vkjA	285	78.37	c.37.1.5	108666
1zc1A	208	79.03		
1cbfA	285	79.56	c.90.1.1	35587
1nrvA	105	83.88	d.93.1.1	86126
2z6rA	265	85.39		
1v2yA	105	88.61	d.15.1.1	100275