# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.11e-09		
2gcxA	75	8.84e-09		
1fx7A	230	0.000616	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.001895		
2dtrA	226	0.007063	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01428		
2dtr	226	0.02522		
1bymA	97	4.503	b.34.1.2	24458
1rhs	296	9.603		
1h75A	81	10.11	c.47.1.1	60716
2c81A	418	12.14		
1e0cA	271	13.74	c.46.1.2,c.46.1.2	32717,32718
3bn1A	373	14.38		
1y8xB	98	15.31		
1mdoA	393	16.19	c.67.1.4	79013
1elqA	390	19.56	c.67.1.3	34436
1ne2A	200	21.07	c.66.1.32	85586
1rhsA	296	21.11	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	23.18	c.46.1.2,c.46.1.2	107762,107763
1o69A	394	25.17	c.67.1.4	92560
1eluA	390	25.95	c.67.1.3	34434
1s68A	249	32.59	d.142.2.4	98591
3cnvA	162	35.31		
2fa1A	160	37.64	d.190.1.2	133182
1z3eB	73	39.29	a.60.3.1	124401
2nygA	273	40.37		
1r1gA	31	42.49	g.3.7.2	96816
2pwyA	258	42.99		
1cbfA	285	47.20	c.90.1.1	35587
1a8i	842	48.10		
2ogeA	399	48.24		
2vsgA	358	49.31	h.4.1.1	45780
1opdA	85	50.43	d.94.1.1	40560
1xkqA	280	51.67	c.2.1.2	115417
1zc1A	208	52.06		
2bb3A	221	52.54	c.90.1.1	128257
1b9hA	388	52.72	c.67.1.4	34488
2px2A	269	54.05		
2pkhA	148	55.62		
1z2mA	155	56.35	d.15.1.1,d.15.1.1	124387,124388
1pchA	88	57.89	d.94.1.1	40564
1hrkA	359	58.79	c.92.1.1	61228
2eayA	233	59.99		
1zccA	248	61.08	c.1.18.3	124903
1ptfA	88	61.13	d.94.1.1	40549
2qh8A	302	61.25		
1va0A	239	63.37	c.90.1.1	119899
1sfxA	109	63.38	a.4.5.50	105505
1v2yA	105	65.31	d.15.1.1	100275
1vkjA	285	65.39	c.37.1.5	108666
2p19A	149	66.62		
2yvlA	248	67.40		
2oggA	152	67.52		
2qwvA	208	68.68		
1y51A	88	73.62		
1mo1A	87	73.98	d.94.1.1	91363
3bpdA	100	74.30		
2ikkA	173	74.51		
1x8mA	288	74.59	b.82.1.13	109516
1wohA	305	75.04	c.42.1.1	109446
1wb4A	297	75.10	c.69.1.2	120827
1yt8A	539	75.84	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1xhlA	297	76.34	c.2.1.2	109591
1pbeA	394	76.50	c.3.1.2,d.16.1.2	30338,37869
1dv0A	47	79.69	a.5.2.1	16289
1lb2B	84	79.80	a.60.3.1	77871
1opd	85	80.15		
1pch	88	81.97		
1ve2A	235	83.13	c.90.1.1	120008
2py6A	409	84.26		
2h1rA	299	85.01		
2graA	277	86.07		
1vekA	84	88.39	a.5.2.1	113636
2z6rA	265	88.49		
1nrvA	105	88.51	d.93.1.1	86126