# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.03e-08		
2gcxA	75	2.94e-08		
2qq9A	226	0.005077		
2dtrA	226	0.05000	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.07515		
1fx7A	230	0.08200	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.4678		
1bymA	97	8.197	b.34.1.2	24458
1rhs	296	27.21		
1uarA	285	40.08	c.46.1.2,c.46.1.2	107762,107763
1zelA	298	42.64		
1rhsA	296	43.99	c.46.1.2,c.46.1.2	32703,32704
1vkjA	285	48.21	c.37.1.5	108666
1z3eB	73	66.78	a.60.3.1	124401
2qh8A	302	69.48		
1nc7A	138	76.01	b.123.1.1	85549
1y8xB	98	81.33		
2jonA	101	89.87