# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	8.63e-10		
2h3jA	75	1.11e-09		
2dtrA	226	0.001814	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.004646		
1fx7A	230	0.006740	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.01252		
2dtr	226	0.02217		
1bymA	97	1.877	b.34.1.2	24458
1rhs	296	5.461		
1e0cA	271	8.074	c.46.1.2,c.46.1.2	32717,32718
1a8i	842	10.85		
2c81A	418	11.51		
1rhsA	296	11.73	c.46.1.2,c.46.1.2	32703,32704
1wc2A	181	13.25		
1y8xB	98	15.02		
1uarA	285	15.48	c.46.1.2,c.46.1.2	107762,107763
2vsgA	358	17.70	h.4.1.1	45780
1tl9A	339	19.37	d.3.1.3	112505
1z2mA	155	21.39	d.15.1.1,d.15.1.1	124387,124388
3bn1A	373	29.59		
2py6A	409	30.14		
1h75A	81	33.20	c.47.1.1	60716
1mdwA	328	34.45	d.3.1.3	84934
2h1rA	299	37.62		
1s68A	249	38.31	d.142.2.4	98591
2z6rA	265	39.62		
1qusA	322	40.45	d.2.1.6	36991
2qwvA	208	40.81		
1z3eB	73	41.79	a.60.3.1	124401
1v2yA	105	47.45	d.15.1.1	100275
1elqA	390	48.06	c.67.1.3	34436
1xkqA	280	48.11	c.2.1.2	115417
1wohA	305	48.69	c.42.1.1	109446
2ggtA	164	52.77	c.47.1.10	135156
1xhlA	297	54.98	c.2.1.2	109591
2gfsA	372	58.67	d.144.1.7	135109
2nygA	273	64.15		
1y8qB	640	66.94		
1rpyA	114	68.55	d.93.1.1	97718
1s2oA	244	69.47	c.108.1.10	118846
1hrkA	359	71.22	c.92.1.1	61228
1eluA	390	71.97	c.67.1.3	34434
1qamA	244	72.25	c.66.1.24	34220
1cbfA	285	74.27	c.90.1.1	35587
1zccA	248	76.63	c.1.18.3	124903
1wb4A	297	76.78	c.69.1.2	120827
1kafA	108	77.30	d.199.1.1	68372
1np3A	338	81.56	a.100.1.2,c.2.1.6	85946,85947
1ne2A	200	83.78	c.66.1.32	85586
1pchA	88	84.51	d.94.1.1	40564
2fa1A	160	87.00	d.190.1.2	133182
1j6oA	268	88.65	c.1.9.12	77088
1ptfA	88	89.12	d.94.1.1	40549
2or0A	414	89.29