# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 5.99e-05 2h3jA 75 0.000361 1fx7A 230 0.01780 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bymA 97 0.6144 b.34.1.2 24458 2qq9A 226 0.8884 1dj7B 75 1.640 b.34.4.3 24598 1gcqA 61 2.302 b.34.2.1 60434 2g6fX 59 3.090 1zlmA 58 3.220 1qw1A 121 3.437 1w70A 60 3.539 3c0cA 73 4.018 1ootA 60 4.198 b.34.2.1 93386 1u06A 62 4.280 b.34.2.1 119404 2a08A 60 4.340 2drmA 58 4.374 1zx6A 58 4.527 2pu9B 74 4.879 1hd3A 62 4.983 b.34.2.1 65802 2ak5A 64 5.550 1bbzA 58 5.867 b.34.2.1 24477 1aboA 62 5.872 b.34.2.1 24474 2j6fA 62 6.158 1utiA 58 6.325 b.34.2.1 99962 1semA 58 6.392 b.34.2.1 24544 2o88A 58 6.394 1oebA 62 6.765 b.34.2.1 86909 2d1xA 66 8.628 1wyxA 69 8.798 1tuc 63 9.103 2gncA 60 9.869 2a28A 54 9.96 1j48A 110 11.30 b.1.7.1 84112 1uj0A 62 11.76 b.34.2.1 99449 2dtr 226 12.70 3cnvA 162 13.20 2bz8A 58 13.24 1uarA 285 13.37 c.46.1.2,c.46.1.2 107762,107763 1ov3A 138 13.39 b.34.2.1,b.34.2.1 87451,87452 1h75A 81 13.46 c.47.1.1 60716 2ggrA 76 13.51 2bzyA 67 14.10 1e0cA 271 14.71 c.46.1.2,c.46.1.2 32717,32718 1eejA 216 14.84 c.47.1.9,d.17.3.1 33057,38071 2ooiA 162 17.88 3bwgA 239 18.91 1noaA 113 19.20 b.1.7.1 22208 1rhs 296 19.98 1z9zA 60 21.90 1ckaA 57 24.33 b.34.2.1 24459 1v7lA 163 24.84 c.8.2.1 113562 1y0mA 61 25.39 1ywpA 64 25.92 2heqA 84 27.10 1zuuA 58 28.38 b.34.2.1 125688 2v1qA 60 28.52 1x2kA 68 28.68 1rhsA 296 29.23 c.46.1.2,c.46.1.2 32703,32704 2jngA 105 31.39 2o31A 67 34.06 1cbfA 285 34.19 c.90.1.1 35587 2pkhA 148 34.73 2de0X 526 36.22 1ng2A 193 36.99 b.34.2.1,b.34.2.1 85660,85661 1kzlA 208 38.53 b.43.4.3,b.43.4.3 77635,77636 1widA 130 40.81 b.142.1.2 114667 2nwiA 172 40.83 1va0A 239 41.27 c.90.1.1 119899 1gy7A 125 41.54 d.17.4.2 70738 2fpeA 62 44.26 2oggA 152 44.58 2j05A 65 44.75 1umuA 116 44.99 b.87.1.1 28382 1u6bA 98 45.58 d.58.7.1 107703 2p19A 149 45.70 1shfA 59 47.19 b.34.2.1 24462 1wlpB 138 47.81 b.34.2.1 121010 1ug1A 92 48.67 b.34.2.1 99360 1wn2A 121 48.95 1gcqC 70 49.37 b.34.2.1 60436 1pht 85 53.03 1o6aA 96 53.16 b.139.1.1 92562 1qcsA 211 53.37 b.52.2.3,d.31.1.1 26927,38461 2iimA 62 54.77 b.34.2.1 137434 2id1A 130 56.57 2qtxA 71 57.70 1zq1A 438 57.72 b.38.3.1,c.88.1.1 125489,125490 2mcm 112 58.59 2pa1A 87 59.32 2diuA 96 61.82 2o9sA 67 63.21 2mcmA 112 64.49 b.1.7.1 22207 2uzcA 88 67.76 1cskA 71 67.91 b.34.2.1 24513 1pqhA 143 69.57 b.52.2.1 95017 1p3hA 99 69.80 b.35.1.1 87734 1q3oA 109 73.09 b.36.1.1 95700 2v1rA 80 76.65 2ppnA 107 76.77 2vknA 70 78.05 2ikkA 173 78.19 3vub 101 78.52 1zuyA 58 79.78 2z9iA 324 81.55 1phtA 85 81.77 b.34.2.1 24483 3cnqP 80 82.43 2yxyA 115 83.18 1yn8A 59 83.28 1ruwA 69 83.55 2gaiA 633 86.06 1nxzA 246 87.04 b.122.1.2,c.116.1.5 86391,86392 2fa1A 160 88.02 d.190.1.2 133182 1ounA 127 88.05 d.17.4.2 38090 1bkf 107 88.07 1a0nB 69 89.65 b.34.2.1 24469