This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA F A 3 3 NATAA S A 4 4 NATAA L A 5 5 NATAA R A 6 6 NATAA D A 7 7 NATAA A A 8 8 NATAA K A 9 9 NATRO C A 10 10 NATAA G A 11 11 NATAA Q A 12 12 NATAA T A 13 13 NATAA V A 14 14 NATAA K A 15 15 NATAA V A 16 16 NATAA V A 17 17 NATAA K A 18 18 NATAA L A 19 19 NATAA H A 20 20 NATAA G A 21 21 NATAA T A 22 22 NATAA G A 23 23 NATAA A A 24 24 NATAA L A 25 25 NATAA K A 26 26 NATAA R A 27 27 NATAA R A 28 28 NATAA I A 29 29 NATAA M A 30 30 NATAA D A 31 31 NATAA M A 32 32 NATAA G A 33 33 NATAA I A 34 34 NATAA T A 35 35 NATAA R A 36 36 NATAA G A 37 37 NATRO C A 38 38 NATAA E A 39 39 NATAA I A 40 40 NATAA Y A 41 41 NATAA I A 42 42 NATAA R A 43 43 NATAA K A 44 44 NATAA V A 45 45 NATAA A A 46 46 NATRO P A 47 47 NATAA L A 48 48 NATAA G A 49 49 NATAA D A 50 50 NATRO P A 51 51 NATAA I A 52 52 NATAA Q A 53 53 NATAA I A 54 54 NATAA N A 55 55 NATAA V A 56 56 NATAA R A 57 57 NATAA G A 58 58 NATAA Y A 59 59 NATAA E A 60 60 NATAA L A 61 61 NATAA S A 62 62 NATAA L A 63 63 NATAA R A 64 64 NATAA K A 65 65 NATAA S A 66 66 NATAA A A 67 67 NATAA A A 68 68 NATAA E A 69 69 NATAA M A 70 70 NATAA I A 71 71 NATAA E A 72 72 NATAA V A 73 73 NATAA E