PFRMAT RR TARGET T0492 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MFSLRDAKCGQTVKVVKLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDP IQINVRGYELSLRKSAAEMIEVE 4 13 0 8 0.928722 4 14 0 8 0.870993 4 15 0 8 0.958946 4 16 0 8 0.850349 4 17 0 8 0.761967 4 18 0 8 0.898509 4 19 0 8 0.561626 4 20 0 8 0.621545 4 24 0 8 0.869097 4 25 0 8 0.701458 4 26 0 8 0.577811 4 27 0 8 0.789762 4 28 0 8 0.881369 4 29 0 8 0.615437 4 30 0 8 0.548548 4 31 0 8 0.772207 4 32 0 8 0.579464 4 33 0 8 0.728143 4 34 0 8 0.623861 4 37 0 8 0.589632 4 38 0 8 0.581894 4 39 0 8 0.863144 4 40 0 8 0.725532 4 41 0 8 0.890148 4 42 0 8 0.735417 4 43 0 8 0.652028 4 44 0 8 0.611381 4 45 0 8 0.58698 4 47 0 8 0.539964 4 50 0 8 0.659664 4 51 0 8 0.741312 4 52 0 8 0.682285 4 53 0 8 0.835693 4 54 0 8 0.590425 4 55 0 8 0.807149 4 58 0 8 0.568485 4 59 0 8 0.563282 4 60 0 8 0.803577 4 61 0 8 0.697287 4 62 0 8 0.746428 4 63 0 8 0.530574 4 67 0 8 0.721146 4 70 0 8 0.794828 5 14 0 8 0.746504 5 15 0 8 0.756206 5 16 0 8 0.745787 5 17 0 8 0.713088 5 18 0 8 0.668005 5 19 0 8 0.606126 5 20 0 8 0.563944 5 27 0 8 0.521995 5 41 0 8 0.521464 5 42 0 8 0.550972 5 43 0 8 0.557281 5 44 0 8 0.560213 5 56 0 8 0.528505 6 15 0 8 0.72709 6 16 0 8 0.743382 6 17 0 8 0.687626 6 18 0 8 0.600523 6 19 0 8 0.55016 6 40 0 8 0.548736 6 41 0 8 0.52963 6 42 0 8 0.527018 6 43 0 8 0.573988 6 44 0 8 0.517272 7 16 0 8 0.794819 7 17 0 8 0.665152 7 18 0 8 0.831905 7 20 0 8 0.513785 7 24 0 8 0.78294 7 25 0 8 0.551701 7 27 0 8 0.653835 7 28 0 8 0.683722 7 31 0 8 0.550072 7 33 0 8 0.530545 7 39 0 8 0.671771 7 40 0 8 0.562597 7 41 0 8 0.734062 7 42 0 8 0.594973 7 43 0 8 0.519992 7 53 0 8 0.649455 7 55 0 8 0.657043 7 60 0 8 0.612275 7 61 0 8 0.545632 7 62 0 8 0.545155 7 70 0 8 0.626527 8 17 0 8 0.635831 8 18 0 8 0.558064 8 19 0 8 0.534397 8 56 0 8 0.519647 9 18 0 8 0.889489 9 19 0 8 0.775906 9 20 0 8 0.809201 9 21 0 8 0.60093 9 24 0 8 0.691541 9 25 0 8 0.579627 9 26 0 8 0.529615 9 27 0 8 0.664009 9 31 0 8 0.558536 9 34 0 8 0.516746 9 35 0 8 0.531631 9 41 0 8 0.710265 9 42 0 8 0.637495 9 43 0 8 0.730424 9 44 0 8 0.752014 9 45 0 8 0.689379 9 46 0 8 0.597463 9 47 0 8 0.602274 9 54 0 8 0.598119 9 55 0 8 0.753818 9 56 0 8 0.729926 9 57 0 8 0.551605 9 61 0 8 0.555407 9 62 0 8 0.61315 9 63 0 8 0.66942 9 64 0 8 0.683193 10 19 0 8 0.799673 10 20 0 8 0.801254 10 21 0 8 0.609439 10 40 0 8 0.541741 10 41 0 8 0.55184 10 42 0 8 0.647654 10 43 0 8 0.71382 10 44 0 8 0.769726 10 45 0 8 0.688591 10 46 0 8 0.588643 10 47 0 8 0.543332 10 54 0 8 0.639679 10 55 0 8 0.625295 10 56 0 8 0.75307 10 57 0 8 0.535517 10 63 0 8 0.616185 10 64 0 8 0.629201 11 20 0 8 0.797851 11 21 0 8 0.540116 11 34 0 8 0.517086 11 40 0 8 0.613008 11 41 0 8 0.678477 11 42 0 8 0.753467 11 43 0 8 0.802287 11 44 0 8 0.833753 11 45 0 8 0.736349 11 46 0 8 0.590488 11 47 0 8 0.522876 11 54 0 8 0.747097 11 55 0 8 0.731334 11 56 0 8 0.759496 11 61 0 8 0.540864 11 63 0 8 0.666898 11 64 0 8 0.621288 12 21 0 8 0.556001 12 24 0 8 0.560827 12 39 0 8 0.558859 12 40 0 8 0.792101 12 41 0 8 0.84321 12 42 0 8 0.851333 12 43 0 8 0.84028 12 44 0 8 0.858009 12 45 0 8 0.758271 12 46 0 8 0.554859 12 47 0 8 0.516975 12 53 0 8 0.60211 12 54 0 8 0.822601 12 55 0 8 0.768339 12 56 0 8 0.754206 12 61 0 8 0.699606 12 62 0 8 0.647621 12 63 0 8 0.717853 12 64 0 8 0.627307 12 70 0 8 0.558581 13 24 0 8 0.825565 13 25 0 8 0.668021 13 27 0 8 0.731952 13 28 0 8 0.868872 13 31 0 8 0.645082 13 33 0 8 0.736087 13 34 0 8 0.616706 13 37 0 8 0.566894 13 38 0 8 0.596476 13 39 0 8 0.850675 13 40 0 8 0.869746 13 41 0 8 0.962696 13 42 0 8 0.929641 13 43 0 8 0.882363 13 44 0 8 0.879389 13 45 0 8 0.775988 13 51 0 8 0.649799 13 52 0 8 0.667217 13 53 0 8 0.881693 13 54 0 8 0.867265 13 55 0 8 0.910574 13 56 0 8 0.707101 13 60 0 8 0.787161 13 61 0 8 0.834095 13 62 0 8 0.867366 13 63 0 8 0.748818 13 64 0 8 0.603848 13 67 0 8 0.611263 13 69 0 8 0.535702 13 70 0 8 0.828966 14 24 0 8 0.544581 14 28 0 8 0.526465 14 37 0 8 0.611605 14 38 0 8 0.675454 14 39 0 8 0.764287 14 40 0 8 0.900374 14 41 0 8 0.926662 14 42 0 8 0.915517 14 43 0 8 0.866528 14 44 0 8 0.850299 14 45 0 8 0.699678 14 51 0 8 0.556487 14 52 0 8 0.650567 14 53 0 8 0.770991 14 54 0 8 0.865593 14 55 0 8 0.761387 14 56 0 8 0.724637 14 60 0 8 0.619311 14 61 0 8 0.757448 14 62 0 8 0.695122 14 63 0 8 0.690314 14 69 0 8 0.521429 14 70 0 8 0.698066 15 24 0 8 0.890301 15 25 0 8 0.764117 15 27 0 8 0.778102 15 28 0 8 0.936494 15 31 0 8 0.806972 15 33 0 8 0.813544 15 34 0 8 0.578679 15 36 0 8 0.51749 15 37 0 8 0.687242 15 38 0 8 0.705994 15 39 0 8 0.953081 15 40 0 8 0.909659 15 41 0 8 0.980388 15 42 0 8 0.931637 15 43 0 8 0.759855 15 44 0 8 0.736663 15 45 0 8 0.571471 15 50 0 8 0.722941 15 51 0 8 0.839272 15 52 0 8 0.825871 15 53 0 8 0.937234 15 54 0 8 0.749828 15 55 0 8 0.867127 15 58 0 8 0.642045 15 59 0 8 0.599095 15 60 0 8 0.871578 15 61 0 8 0.795231 15 62 0 8 0.848936 15 67 0 8 0.7358 15 69 0 8 0.538151 15 70 0 8 0.895779 16 25 0 8 0.644322 16 27 0 8 0.67075 16 28 0 8 0.822626 16 31 0 8 0.68268 16 33 0 8 0.594883 16 34 0 8 0.538728 16 35 0 8 0.550441 16 36 0 8 0.742377 16 37 0 8 0.8039 16 38 0 8 0.831135 16 39 0 8 0.914335 16 40 0 8 0.927262 16 41 0 8 0.916614 16 42 0 8 0.860295 16 43 0 8 0.64698 16 44 0 8 0.627337 16 50 0 8 0.68379 16 51 0 8 0.764834 16 52 0 8 0.789337 16 53 0 8 0.787415 16 54 0 8 0.693264 16 55 0 8 0.608783 16 58 0 8 0.590438 16 59 0 8 0.528228 16 60 0 8 0.704248 16 61 0 8 0.622634 16 62 0 8 0.553802 16 67 0 8 0.580087 16 69 0 8 0.61812 16 70 0 8 0.787661 17 36 0 8 0.636847 17 37 0 8 0.772466 17 38 0 8 0.809476 17 39 0 8 0.76819 17 40 0 8 0.859993 17 41 0 8 0.721125 17 42 0 8 0.65457 17 43 0 8 0.540332 17 50 0 8 0.662562 17 51 0 8 0.672075 17 52 0 8 0.689035 17 54 0 8 0.566795 18 27 0 8 0.733681 18 28 0 8 0.842408 18 31 0 8 0.755799 18 33 0 8 0.641261 18 34 0 8 0.569671 18 35 0 8 0.524008 18 36 0 8 0.627735 18 37 0 8 0.734436 18 38 0 8 0.73673 18 39 0 8 0.898624 18 40 0 8 0.794437 18 41 0 8 0.905933 18 42 0 8 0.660506 18 43 0 8 0.53349 18 50 0 8 0.713817 18 51 0 8 0.831623 18 52 0 8 0.779201 18 53 0 8 0.841514 18 54 0 8 0.518769 18 55 0 8 0.705241 18 58 0 8 0.606655 18 59 0 8 0.615734 18 60 0 8 0.828538 18 61 0 8 0.703096 18 62 0 8 0.744097 18 67 0 8 0.700589 18 69 0 8 0.553663 18 70 0 8 0.779159 19 36 0 8 0.556554 19 37 0 8 0.579054 19 38 0 8 0.597594 19 39 0 8 0.535846 19 40 0 8 0.613731 19 41 0 8 0.545328 19 50 0 8 0.520838 20 36 0 8 0.570523 20 37 0 8 0.54704 20 38 0 8 0.540721 20 39 0 8 0.623309 20 40 0 8 0.539692 20 41 0 8 0.611103 20 50 0 8 0.523035 20 51 0 8 0.533884 24 33 0 8 0.554644 24 39 0 8 0.729766 24 41 0 8 0.781178 24 50 0 8 0.524157 24 51 0 8 0.569125 24 53 0 8 0.677384 24 55 0 8 0.642075 24 60 0 8 0.681897 24 61 0 8 0.591234 24 62 0 8 0.667653 24 70 0 8 0.521912 25 35 0 8 0.526094 25 36 0 8 0.590051 25 37 0 8 0.594198 25 38 0 8 0.529832 25 39 0 8 0.796242 25 40 0 8 0.598219 25 41 0 8 0.806287 25 44 0 8 0.567416 25 47 0 8 0.577251 25 50 0 8 0.542775 25 51 0 8 0.574069 25 52 0 8 0.525341 25 53 0 8 0.638007 25 55 0 8 0.6122 25 60 0 8 0.640544 25 61 0 8 0.535872 25 62 0 8 0.565381 25 67 0 8 0.515311 25 70 0 8 0.551993 26 39 0 8 0.546831 26 41 0 8 0.543601 27 39 0 8 0.539702 27 41 0 8 0.566607 28 37 0 8 0.642141 28 39 0 8 0.918189 28 40 0 8 0.604373 28 41 0 8 0.937404 28 42 0 8 0.65613 28 43 0 8 0.52216 28 44 0 8 0.574184 28 50 0 8 0.691475 28 51 0 8 0.794431 28 52 0 8 0.639556 28 53 0 8 0.897527 28 55 0 8 0.848144 28 58 0 8 0.545193 28 60 0 8 0.821196 28 61 0 8 0.707879 28 62 0 8 0.85777 28 67 0 8 0.744648 28 70 0 8 0.802858 29 38 0 8 0.596971 29 39 0 8 0.881946 29 40 0 8 0.676911 29 41 0 8 0.888758 29 42 0 8 0.663397 29 43 0 8 0.639109 29 44 0 8 0.682225 29 45 0 8 0.5986 29 47 0 8 0.695353 29 48 0 8 0.523631 29 50 0 8 0.565145 29 51 0 8 0.677275 29 52 0 8 0.599146 29 53 0 8 0.797 29 54 0 8 0.554366 29 55 0 8 0.867017 29 56 0 8 0.566584 29 60 0 8 0.715241 29 61 0 8 0.610006 29 62 0 8 0.728386 29 67 0 8 0.762393 29 69 0 8 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0 8 0.901042 50 64 0 8 0.835365 50 65 0 8 0.622989 50 66 0 8 0.658422 50 67 0 8 0.680216 50 70 0 8 0.772288 51 60 0 8 0.924476 51 61 0 8 0.964004 51 62 0 8 0.977412 51 63 0 8 0.923306 51 64 0 8 0.860393 51 65 0 8 0.565053 51 66 0 8 0.719162 51 67 0 8 0.82528 51 69 0 8 0.569053 51 70 0 8 0.900407 52 61 0 8 0.957025 52 62 0 8 0.953494 52 63 0 8 0.893706 52 64 0 8 0.729696 52 66 0 8 0.568944 52 67 0 8 0.666723 52 69 0 8 0.583884 52 70 0 8 0.841938 53 62 0 8 0.97702 53 63 0 8 0.846154 53 64 0 8 0.692313 53 66 0 8 0.630866 53 67 0 8 0.867067 53 69 0 8 0.73598 53 70 0 8 0.954046 54 63 0 8 0.663565 54 67 0 8 0.621887 54 68 0 8 0.563451 54 69 0 8 0.754539 54 70 0 8 0.822448 55 66 0 8 0.54464 55 67 0 8 0.825252 55 68 0 8 0.555384 55 69 0 8 0.704186 55 70 0 8 0.883676 56 67 0 8 0.673943 56 68 0 8 0.587619 56 69 0 8 0.660896 56 70 0 8 0.675677 58 67 0 8 0.719635 58 70 0 8 0.779375 59 69 0 8 0.589806 59 70 0 8 0.836067 60 69 0 8 0.630413 60 70 0 8 0.934653 61 70 0 8 0.901695 END