PFRMAT RR TARGET T0492 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MFSLRDAKCGQTVKVVKLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDP IQINVRGYELSLRKSAAEMIEVE 3 12 0 8 0.611703 3 13 0 8 0.630219 3 14 0 8 0.759588 3 15 0 8 0.72765 3 17 0 8 0.765578 3 18 0 8 0.683802 3 19 0 8 0.702575 3 20 0 8 0.602124 3 24 0 8 0.563595 3 40 0 8 0.693341 3 41 0 8 0.621387 3 43 0 8 0.720798 3 44 0 8 0.720671 3 45 0 8 0.700088 3 54 0 8 0.606838 3 55 0 8 0.602585 3 56 0 8 0.629948 3 58 0 8 0.581757 3 69 0 8 0.580812 3 71 0 8 0.644343 4 13 0 8 0.872875 4 14 0 8 0.81226 4 15 0 8 0.945472 4 16 0 8 0.800255 4 17 0 8 0.725078 4 18 0 8 0.876817 4 20 0 8 0.589686 4 24 0 8 0.820633 4 25 0 8 0.668698 4 27 0 8 0.802262 4 28 0 8 0.87718 4 29 0 8 0.572312 4 31 0 8 0.830327 4 32 0 8 0.76702 4 33 0 8 0.739507 4 34 0 8 0.659613 4 36 0 8 0.630646 4 37 0 8 0.607509 4 39 0 8 0.822603 4 40 0 8 0.617073 4 41 0 8 0.837636 4 42 0 8 0.726269 4 43 0 8 0.596651 4 44 0 8 0.67168 4 45 0 8 0.642972 4 47 0 8 0.579729 4 49 0 8 0.636014 4 50 0 8 0.748098 4 51 0 8 0.725623 4 52 0 8 0.605082 4 53 0 8 0.79229 4 54 0 8 0.580261 4 55 0 8 0.803356 4 58 0 8 0.667042 4 60 0 8 0.792465 4 61 0 8 0.750132 4 62 0 8 0.836483 4 63 0 8 0.632795 4 67 0 8 0.824842 4 70 0 8 0.77654 5 14 0 8 0.763132 5 15 0 8 0.679573 5 16 0 8 0.676082 5 18 0 8 0.744981 5 19 0 8 0.698082 5 24 0 8 0.609759 5 34 0 8 0.57423 5 43 0 8 0.608587 5 44 0 8 0.637063 5 45 0 8 0.598627 5 49 0 8 0.582299 5 56 0 8 0.623429 5 58 0 8 0.564553 6 15 0 8 0.679628 6 16 0 8 0.672277 6 19 0 8 0.648911 6 24 0 8 0.596746 6 43 0 8 0.577222 6 44 0 8 0.68505 6 45 0 8 0.626495 7 16 0 8 0.726089 7 18 0 8 0.80512 7 24 0 8 0.674361 7 27 0 8 0.573094 7 28 0 8 0.639508 7 31 0 8 0.719135 7 32 0 8 0.573074 7 33 0 8 0.576038 7 39 0 8 0.650659 7 41 0 8 0.680717 7 44 0 8 0.569862 7 45 0 8 0.637118 7 50 0 8 0.591484 7 53 0 8 0.573855 7 55 0 8 0.694389 7 60 0 8 0.587876 7 61 0 8 0.615507 7 62 0 8 0.627051 7 67 0 8 0.632914 8 17 0 8 0.678062 8 19 0 8 0.628415 8 44 0 8 0.57358 9 18 0 8 0.69466 9 19 0 8 0.735197 9 20 0 8 0.624233 9 21 0 8 0.607807 9 31 0 8 0.624567 9 35 0 8 0.612524 9 43 0 8 0.654303 9 44 0 8 0.661217 9 45 0 8 0.591033 9 46 0 8 0.580073 9 47 0 8 0.628461 9 55 0 8 0.571412 9 56 0 8 0.601463 10 20 0 8 0.604922 10 32 0 8 0.59244 10 42 0 8 0.607489 10 43 0 8 0.648097 10 44 0 8 0.645745 10 54 0 8 0.562835 10 56 0 8 0.578882 11 20 0 8 0.66096 11 32 0 8 0.5807 11 43 0 8 0.72262 11 44 0 8 0.750218 11 45 0 8 0.74166 11 47 0 8 0.604514 11 54 0 8 0.67574 11 55 0 8 0.672348 11 56 0 8 0.644415 12 21 0 8 0.581085 12 32 0 8 0.668306 12 33 0 8 0.780906 12 34 0 8 0.710715 12 35 0 8 0.606143 12 37 0 8 0.585695 12 38 0 8 0.698366 12 40 0 8 0.855587 12 41 0 8 0.778889 12 42 0 8 0.82796 12 43 0 8 0.869014 12 44 0 8 0.897088 12 45 0 8 0.845825 12 54 0 8 0.890286 12 55 0 8 0.818949 12 56 0 8 0.771396 12 61 0 8 0.618833 12 63 0 8 0.645804 12 64 0 8 0.607274 12 69 0 8 0.619392 12 71 0 8 0.783569 13 24 0 8 0.619759 13 28 0 8 0.733701 13 31 0 8 0.774611 13 32 0 8 0.6855 13 33 0 8 0.810783 13 34 0 8 0.655904 13 37 0 8 0.619819 13 39 0 8 0.842676 13 41 0 8 0.946131 13 42 0 8 0.895509 13 43 0 8 0.844344 13 44 0 8 0.881535 13 45 0 8 0.847192 13 51 0 8 0.639605 13 52 0 8 0.641679 13 53 0 8 0.864902 13 54 0 8 0.87545 13 55 0 8 0.886446 13 56 0 8 0.632336 13 60 0 8 0.715371 13 61 0 8 0.709563 13 62 0 8 0.776391 13 63 0 8 0.636708 13 67 0 8 0.73307 13 69 0 8 0.69677 13 70 0 8 0.805416 13 71 0 8 0.765652 14 33 0 8 0.569983 14 34 0 8 0.646832 14 37 0 8 0.724708 14 38 0 8 0.836945 14 39 0 8 0.718036 14 40 0 8 0.871617 14 41 0 8 0.831928 14 42 0 8 0.792677 14 43 0 8 0.764719 14 44 0 8 0.800656 14 45 0 8 0.738823 14 50 0 8 0.586459 14 51 0 8 0.583423 14 52 0 8 0.704035 14 53 0 8 0.672697 14 54 0 8 0.801739 14 55 0 8 0.665938 14 56 0 8 0.634508 14 58 0 8 0.624336 14 61 0 8 0.586297 14 69 0 8 0.692664 14 70 0 8 0.680174 14 71 0 8 0.779814 15 24 0 8 0.789021 15 27 0 8 0.734059 15 28 0 8 0.935605 15 29 0 8 0.734571 15 31 0 8 0.844083 15 32 0 8 0.622735 15 33 0 8 0.886066 15 36 0 8 0.581755 15 37 0 8 0.732533 15 38 0 8 0.731292 15 39 0 8 0.903354 15 40 0 8 0.888371 15 41 0 8 0.938913 15 42 0 8 0.871883 15 43 0 8 0.702137 15 44 0 8 0.714494 15 45 0 8 0.603639 15 50 0 8 0.705532 15 51 0 8 0.786877 15 52 0 8 0.706127 15 53 0 8 0.891522 15 54 0 8 0.729867 15 55 0 8 0.913884 15 58 0 8 0.636581 15 60 0 8 0.788514 15 61 0 8 0.696661 15 62 0 8 0.824856 15 67 0 8 0.756431 15 69 0 8 0.608885 15 70 0 8 0.899037 15 71 0 8 0.737166 16 25 0 8 0.600097 16 27 0 8 0.631315 16 28 0 8 0.723402 16 31 0 8 0.725621 16 33 0 8 0.638247 16 37 0 8 0.709806 16 38 0 8 0.779509 16 39 0 8 0.814566 16 40 0 8 0.903783 16 41 0 8 0.884132 16 42 0 8 0.841679 16 43 0 8 0.710718 16 44 0 8 0.74128 16 45 0 8 0.568527 16 51 0 8 0.700348 16 52 0 8 0.734621 16 53 0 8 0.751509 16 54 0 8 0.721634 16 55 0 8 0.644525 16 58 0 8 0.588481 16 69 0 8 0.685675 16 70 0 8 0.721897 16 71 0 8 0.770813 17 40 0 8 0.818486 17 42 0 8 0.679352 17 43 0 8 0.628569 17 44 0 8 0.643656 17 52 0 8 0.627265 17 54 0 8 0.579311 17 56 0 8 0.562749 17 58 0 8 0.562027 17 71 0 8 0.625063 18 27 0 8 0.818064 18 28 0 8 0.854605 18 29 0 8 0.617455 18 31 0 8 0.819229 18 36 0 8 0.580312 18 37 0 8 0.661085 18 38 0 8 0.646166 18 39 0 8 0.826975 18 40 0 8 0.784793 18 41 0 8 0.818829 18 42 0 8 0.678571 18 43 0 8 0.62257 18 44 0 8 0.640507 18 45 0 8 0.590131 18 49 0 8 0.762461 18 50 0 8 0.676448 18 51 0 8 0.753727 18 52 0 8 0.70068 18 53 0 8 0.814155 18 54 0 8 0.694306 18 55 0 8 0.771839 18 58 0 8 0.693929 18 59 0 8 0.618703 18 60 0 8 0.8433 18 61 0 8 0.651717 18 62 0 8 0.736033 18 67 0 8 0.658633 18 70 0 8 0.709774 18 71 0 8 0.574796 19 38 0 8 0.586005 19 40 0 8 0.68461 19 43 0 8 0.596738 19 44 0 8 0.609702 19 54 0 8 0.588464 19 56 0 8 0.578798 19 58 0 8 0.607875 19 59 0 8 0.564763 20 31 0 8 0.642327 20 40 0 8 0.583668 20 43 0 8 0.601662 20 52 0 8 0.715331 20 55 0 8 0.570843 20 58 0 8 0.718519 20 59 0 8 0.632543 20 60 0 8 0.603234 24 39 0 8 0.699146 24 41 0 8 0.658859 24 44 0 8 0.579567 24 45 0 8 0.66328 24 52 0 8 0.576584 24 53 0 8 0.655359 24 55 0 8 0.61524 24 60 0 8 0.673011 24 61 0 8 0.586905 24 62 0 8 0.566815 25 34 0 8 0.709335 25 35 0 8 0.58406 25 37 0 8 0.619897 25 43 0 8 0.573368 25 44 0 8 0.61172 25 45 0 8 0.724577 25 46 0 8 0.587235 25 52 0 8 0.657244 27 50 0 8 0.567596 27 53 0 8 0.6795 27 55 0 8 0.622896 27 60 0 8 0.66269 27 62 0 8 0.572767 28 39 0 8 0.886655 28 41 0 8 0.882227 28 42 0 8 0.652564 28 44 0 8 0.617974 28 45 0 8 0.571346 28 50 0 8 0.68336 28 51 0 8 0.718259 28 53 0 8 0.893564 28 55 0 8 0.824703 28 60 0 8 0.818318 28 61 0 8 0.686253 28 62 0 8 0.846795 28 67 0 8 0.813871 28 70 0 8 0.825858 29 39 0 8 0.740869 29 41 0 8 0.727173 29 43 0 8 0.646344 29 44 0 8 0.77955 29 45 0 8 0.805806 29 46 0 8 0.651375 29 47 0 8 0.725396 29 49 0 8 0.692291 29 53 0 8 0.755099 29 55 0 8 0.689366 29 58 0 8 0.654944 29 60 0 8 0.776212 29 62 0 8 0.580755 29 66 0 8 0.640588 29 67 0 8 0.727774 29 70 0 8 0.629927 30 45 0 8 0.584014 31 41 0 8 0.791235 31 42 0 8 0.68599 31 43 0 8 0.669716 31 44 0 8 0.697232 31 45 0 8 0.784726 31 47 0 8 0.673573 31 49 0 8 0.587528 31 50 0 8 0.640649 31 51 0 8 0.674952 31 52 0 8 0.641279 31 53 0 8 0.822437 31 54 0 8 0.587647 31 55 0 8 0.743728 31 58 0 8 0.698623 31 60 0 8 0.853333 31 61 0 8 0.880352 31 62 0 8 0.738946 31 63 0 8 0.569343 31 67 0 8 0.729778 31 70 0 8 0.700564 32 41 0 8 0.71613 32 43 0 8 0.577961 32 44 0 8 0.657742 32 45 0 8 0.654106 32 46 0 8 0.584321 32 47 0 8 0.56811 32 49 0 8 0.615806 32 50 0 8 0.704026 32 51 0 8 0.572286 32 53 0 8 0.607324 32 55 0 8 0.706044 32 60 0 8 0.651556 32 61 0 8 0.654803 32 62 0 8 0.724516 32 63 0 8 0.618917 32 67 0 8 0.738649 32 70 0 8 0.656506 33 42 0 8 0.774586 33 43 0 8 0.757042 33 44 0 8 0.805592 33 45 0 8 0.772862 33 47 0 8 0.628968 33 49 0 8 0.640243 33 50 0 8 0.765941 33 51 0 8 0.770415 33 52 0 8 0.703291 33 53 0 8 0.83945 33 54 0 8 0.709933 33 55 0 8 0.80492 33 56 0 8 0.679098 33 57 0 8 0.616104 33 58 0 8 0.752636 33 59 0 8 0.612054 33 60 0 8 0.853212 33 61 0 8 0.746164 33 62 0 8 0.831112 33 63 0 8 0.626596 33 67 0 8 0.799778 33 70 0 8 0.788984 34 43 0 8 0.741915 34 44 0 8 0.858908 34 45 0 8 0.851478 34 46 0 8 0.817998 34 47 0 8 0.739755 34 48 0 8 0.622469 34 49 0 8 0.761041 34 50 0 8 0.620351 34 51 0 8 0.646697 34 52 0 8 0.651646 34 53 0 8 0.609006 34 54 0 8 0.659358 34 55 0 8 0.690168 34 56 0 8 0.762134 34 57 0 8 0.646645 34 58 0 8 0.682835 34 59 0 8 0.605976 34 60 0 8 0.676419 34 61 0 8 0.684223 34 62 0 8 0.573249 34 63 0 8 0.588465 34 64 0 8 0.673526 34 66 0 8 0.682875 34 67 0 8 0.602944 34 69 0 8 0.596356 35 44 0 8 0.82775 35 45 0 8 0.792483 35 46 0 8 0.642165 35 47 0 8 0.663137 35 48 0 8 0.61079 35 49 0 8 0.601913 35 54 0 8 0.698033 35 55 0 8 0.567085 35 56 0 8 0.749222 35 57 0 8 0.610523 36 45 0 8 0.856796 36 46 0 8 0.647307 36 47 0 8 0.601486 36 48 0 8 0.570612 36 54 0 8 0.796673 36 55 0 8 0.73012 36 56 0 8 0.738567 36 63 0 8 0.643298 36 71 0 8 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0 8 0.835186 52 61 0 8 0.934935 52 62 0 8 0.89512 52 63 0 8 0.839972 52 64 0 8 0.717218 52 66 0 8 0.774612 52 67 0 8 0.731241 52 68 0 8 0.721066 52 69 0 8 0.840771 52 70 0 8 0.818045 52 71 0 8 0.90347 53 62 0 8 0.956306 53 63 0 8 0.783814 53 64 0 8 0.627533 53 66 0 8 0.693147 53 67 0 8 0.900969 53 69 0 8 0.842546 53 70 0 8 0.94082 53 71 0 8 0.87472 54 64 0 8 0.565777 54 67 0 8 0.573447 54 68 0 8 0.59229 54 69 0 8 0.762795 54 70 0 8 0.782262 54 71 0 8 0.820189 55 67 0 8 0.769882 55 69 0 8 0.68103 55 70 0 8 0.85067 55 71 0 8 0.637198 56 66 0 8 0.652161 56 67 0 8 0.618198 56 68 0 8 0.635019 56 69 0 8 0.706026 56 71 0 8 0.702395 57 66 0 8 0.585897 57 67 0 8 0.576981 57 69 0 8 0.660359 58 67 0 8 0.776142 58 68 0 8 0.565851 58 69 0 8 0.768429 58 70 0 8 0.7614 58 71 0 8 0.85386 59 68 0 8 0.613757 59 69 0 8 0.80337 59 70 0 8 0.710714 59 71 0 8 0.829992 60 69 0 8 0.792048 60 70 0 8 0.914556 60 71 0 8 0.823432 61 70 0 8 0.859818 61 71 0 8 0.850162 62 71 0 8 0.798079 END