ConstraintSet hand.sheets
SheetConstraint	H89	I93	P127	N131	hbond	I93	1

SheetConstraint	R115	S119	N131	P127	hbond	V117	1

SheetConstraint	A9	S13	E90	Y94	hbond 	E12

# I've put a weight of 5 on helices that were in the T0489.dssp-ehl2.constraints
ConstraintSet try1.helices
HelixConstraint S13	M18	1
HelixConstraint E17	I26	5
HelixConstraint L24	H31	5
HelixConstraint S33	L53	5
HelixConstraint K51	G58	1
HelixConstraint T62	L75	5
HelixConstraint F73	E79	1
HelixConstraint L146	T157	5
HelixConstraint V174	I192	5
HelixConstraint D209	A224	5
HelixConstraint F232	R244	5
HelixConstraint P247	E253	5

ConstraintSet try3.helices
HelixConstraint M18	A25	5
HelixConstraint L24	E36	5
HelixConstraint Q37	L53	5
HelixConstraint P63	L75	5
HelixConstraint F73	L80	1
HelixConstraint A96	D101	1
HelixConstraint N145	S164	5
HelixConstraint W177	H182	5
HelixConstraint D190	G196	1
HelixConstraint D209	S223	5
HelixConstraint F232	Y243	5
HelixConstraint P247	E253	5


SetCost \
	align_constraints 20 \
	hand.sheets 80  \
	try1.helices 40 \
	try3.helices 40 \
	pred_nb11_back 80 \
	pred_alpha_back 10 \
	pred_n_notor_back 5 \
	pred_bys_back 5 \
	pred_pb_back 3 \
	wet6.5 15  dry5 15 dry6.5 15 dry8 40 dry12 40 \
	phobic_fit 3 \
	sidechain 5 \
	n_ca_c	2 bad_peptide 5 \
	soft_clashes 150  backbone_clashes 10 \
	break 500  \
	hbond_geom 10 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 20 \
	hbond_geom_beta_pair 40