ConstraintSet try1.sheets
SheetConstraint (T0489)H89 (T0489)I93	(T0489)P127 (T0489)N131	hbond (T0489)I93	1
SheetConstraint (T0489)R115 (T0489)Q118	(T0489)N131 (T0489)V128	hbond (T0489)V117	1

# I've put a weight of 5 on helices that were in the T0489.dssp-ehl2.constraints
ConstraintSet try1.helices
HelixConstraint (T0489)S13	(T0489)M18	1
HelixConstraint (T0489)E17	(T0489)I26	5
HelixConstraint (T0489)L24	(T0489)H31	5
HelixConstraint (T0489)S33	(T0489)L53	5
HelixConstraint (T0489)K51	(T0489)G58	1
HelixConstraint (T0489)T62	(T0489)L75	5
HelixConstraint (T0489)F73	(T0489)E79	1
HelixConstraint (T0489)L146	(T0489)T157	5
HelixConstraint (T0489)V174	(T0489)I192	5
HelixConstraint (T0489)D209	(T0489)A224	5
HelixConstraint (T0489)F232	(T0489)R244	5
HelixConstraint (T0489)P247	(T0489)E253	5


SetCost \
	align_constraints 20 \
	try1.sheets 20  \
	try1.helices 40 \
	pred_nb11_back 80 \
	pred_alpha_back 10 \
	pred_n_notor_back 5 \
	pred_bys_back 5 \
	pred_pb_back 3 \
	wet6.5 15  dry5 15 dry6.5 15 dry8 40 dry12 40 \
	phobic_fit 3 \
	sidechain 5 \
	n_ca_c	2 bad_peptide 5 \
	soft_clashes 150  backbone_clashes 10 \
	break 500  \
	hbond_geom 10 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 20 \
	hbond_geom_beta_pair 40