# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3b4rA 219 4.534e-01 1f66C 104 6.544e-01 1aoiC a.22.1.1 16442 1dy9A 176 2.143e+00 1jxpA b.47.1.3 26400 1o7nB 194 2.364e+00 d.17.4.4 81164 1ndoB 194 3.423e+00 1ndoB d.17.4.4 38121 1y0nA 72 3.605e+00 d.291.1.1 116305 2bptA 861 4.638e+00 a.118.1.1 128951 1f06A 321 5.281e+00 1dapA c.2.1.3 59556 d.81.1.3 59557 1dapA 321 5.320e+00 1dapA c.2.1.3 30053 d.81.1.3 39968 2b1xB 168 5.426e+00 d.17.4.4 127677 1eg9B 194 5.484e+00 1ndoB d.17.4.4 38120 2fz4A 207 6.666e+00 c.37.1.19 134419 1dkxA 220 6.850e+00 1dkzA a.8.4.1 90339 b.130.1.1 90340 2op6A 151 7.308e+00 2bk9A 154 7.408e+00 2olpA 152 8.194e+00 1q0eA 152 8.800e+00 b.1.8.1 95504 2bmoB 195 9.053e+00 d.17.4.4 128806 2qvcA 303 9.829e+00 3c6qA 306 1.064e+01 2fp7B 148 1.149e+01 b.47.1.3 133899 1f7zA 214 1.276e+01 5ptp b.47.1.2 59681 3b6eA 183 1.282e+01 1azvA 154 1.283e+01 1mfmA b.1.8.1 22247 1b0b 143 1.290e+01 2fal 1dkzA 216 1.341e+01 1dkzA a.8.4.1 90345 b.130.1.1 90346 1xodA 106 1.417e+01 b.55.1.4 122202 2imrA 381 1.443e+01 1gudA 289 1.510e+01 c.93.1.1 83326 1shwB 182 1.510e+01 b.18.1.4 105563 2zfoB 143 1.555e+01 1w27A 691 1.583e+01 a.127.1.2 114096 1uliB 178 1.600e+01 d.17.4.4 107923 1u00A 228 1.709e+01 a.8.4.1 112900 b.130.1.1 112901 1qgoA 258 1.724e+01 1qgoA c.92.1.2 35596 1xtoA 305 1.736e+01 d.157.1.6 116030 2h8fA 143 1.778e+01 a.1.1.2 136239 1dm1A 147 1.807e+01 2fal a.1.1.2 15153 1xouB 85 1.818e+01 a.231.1.2 115716 3c3dA 307 1.911e+01 1tjyA 317 1.916e+01 c.93.1.1 107062 2eutA 292 2.005e+01 a.93.1.1 132407 1vcbC 143 2.026e+01 1vcbC b.3.3.1 22535 1xsoA 151 2.042e+01 1mfmA b.1.8.1 22273 1ckeA 213 2.082e+01 1ckeA c.37.1.1 31846 1y0eA 223 2.127e+01 c.1.2.5 116297 1vjuA 292 2.238e+01 d.248.1.1 100835 2h3hA 314 2.274e+01 2qmeI 25 2.279e+01 2ivfC 215 2.287e+01 2fal 147 2.295e+01 2fal 2dbgA 104 2.323e+01 1iwmA 178 2.332e+01 b.125.1.2 83758 1fiqB 306 2.338e+01 1fiqB d.87.2.1 40229 d.145.1.3 41760 3c5xA 391 2.355e+01 1o3uA 121 2.360e+01 a.24.16.3 86615 1b4tA 154 2.385e+01 1mfmA b.1.8.1 22283 2uy1A 439 2.422e+01 1sc6A 391 2.429e+01 c.2.1.4 118932 c.23.12.1 118933 d.58.18.1 118934 1tqhA 243 2.482e+01 c.69.1.29 107225 2nrlA 146 2.540e+01 1t6jA 648 2.623e+01 a.127.1.2 112259 1qwoA 436 2.728e+01 c.60.1.2 104620 1x46A 151 2.830e+01 2vcnA 250 2.835e+01 1e9pA 152 2.863e+01 1mfmA b.1.8.1 22215 1thgA 545 2.940e+01 c.69.1.17 34763 2qniA 195 2.944e+01 1uxoA 187 3.013e+01 c.69.1.31 108121 1zvpA 129 3.016e+01 d.58.18.9 125714 d.58.18.9 125715 1wxxA 383 3.025e+01 b.122.1.9 121418 c.66.1.51 121419 1pzsA 172 3.026e+01 b.1.8.1 104397 1f1gA 154 3.047e+01 b.1.8.1 76153 2p4eA 495 3.366e+01 1tzlA 578 3.368e+01 c.3.1.2 112876 d.16.1.1 112877 1ispA 180 3.377e+01 c.69.1.18 76778 2phnA 249 3.388e+01 d.340.1.1 139696 1ofuA 308 3.452e+01 c.32.1.1 86972 d.79.2.1 86973 1x3kA 153 3.459e+01 1hz4A 367 3.479e+01 a.118.8.2 65960 1mctA 224 3.593e+01 5ptp b.47.1.2 25961 1gca 310 3.609e+01 1gca 2qmcA 342 3.651e+01 1z6nA 167 3.787e+01 c.47.1.1 124530 1hjiB 27 3.800e+01 j.9.5.1 65847 3silA 379 3.823e+01 b.68.1.1 27542 1hj9A 224 3.851e+01 b.47.1.2 65845 1j9aA 185 3.883e+01 c.55.3.5 84135 2h3jA 76 3.974e+01 1xbrA 185 3.992e+01 1xbrA b.2.5.4 22458