PFRMAT SS
TARGET T0489
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0489.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 154
METHOD
MODEL 1
M C 0.893
M C 0.465
F H 0.553
K H 0.664
W H 0.608
P H 0.580
W H 0.652
K H 0.500
A H 0.503
D H 0.438
D C 0.323
E C 0.498
S C 0.755
G C 0.819
N C 0.874
A H 0.814
E H 0.873
M H 0.907
P H 0.968
W H 0.954
E H 0.959
Q H 0.954
A H 0.941
L H 0.916
A H 0.702
I C 0.626
P C 0.477
V G 0.657
L G 0.895
A G 0.860
H G 0.517
L C 0.703
S C 0.889
S H 0.967
T H 0.980
E H 0.981
Q H 0.997
H H 0.997
K H 0.996
L H 0.995
T H 0.999
Q H 0.997
M H 0.997
A H 0.998
A H 0.996
R H 0.993
F H 0.982
L H 0.965
Q H 0.831
Q H 0.590
K T 0.331
R C 0.360
L E 0.528
V E 0.699
A E 0.516
L T 0.779
Q T 0.872
G T 0.825
L E 0.457
E E 0.508
L C 0.481
T C 0.782
P H 0.976
L H 0.985
H H 0.987
Q H 0.996
A H 0.997
R H 0.996
I H 0.996
A H 0.995
M H 0.989
L H 0.987
F H 0.991
C H 0.988
L H 0.986
P H 0.975
V H 0.976
L H 0.960
E H 0.511
L C 0.615
G C 0.515
I G 0.517
E G 0.543
W G 0.512
L T 0.479
D T 0.564
G T 0.580
F T 0.391
H E 0.660
E E 0.991
V E 0.995
L E 0.994
I E 0.968
Y E 0.797
P T 0.408
A T 0.500
P T 0.450
F T 0.422
I C 0.441
V E 0.400
D E 0.315
D E 0.313
E E 0.431
W E 0.493
E E 0.463
D T 0.388
D T 0.596
I T 0.670
G T 0.552
L E 0.515
V E 0.619
H E 0.405
N T 0.407
Q T 0.470
R T 0.376
V E 0.392
V E 0.523
Q E 0.632
S E 0.490
G E 0.330
Q E 0.284
S T 0.293
W T 0.425
Q T 0.504
Q T 0.552
G T 0.497
P C 0.597
V E 0.832
V E 0.917
L E 0.787
N C 0.698
W H 0.728
L H 0.768
D H 0.672
I H 0.769
Q H 0.787
D H 0.736
S C 0.424
F C 0.488
D T 0.649
A T 0.730
S T 0.704
G T 0.654
F C 0.361
N E 0.493
L E 0.465
V H 0.683
V H 0.847
H H 0.858
E H 0.864
V H 0.914
A H 0.922
H H 0.927
K H 0.940
L H 0.927
D H 0.712
T H 0.650
R H 0.496
N T 0.515
G T 0.429
D T 0.463
R T 0.664
A T 0.716
S T 0.579
G C 0.467
V C 0.593
P C 0.544
L C 0.487
I T 0.466
P T 0.489
L T 0.528
R T 0.426
E C 0.419
V H 0.773
A H 0.855
G H 0.937
W H 0.969
E H 0.970
H H 0.979
D H 0.966
L H 0.951
H H 0.954
A H 0.981
A H 0.990
M H 0.991
N H 0.989
N H 0.990
I H 0.994
Q H 0.997
D H 0.996
E H 0.995
I H 0.992
D H 0.986
L H 0.929
V H 0.622
G C 0.390
E T 0.409
S T 0.330
A T 0.368
A T 0.366
S T 0.345
I C 0.377
D T 0.402
A H 0.510
Y H 0.455
A H 0.424
A H 0.487
T C 0.327
D C 0.712
P H 0.937
A H 0.970
E H 0.965
C H 0.955
F H 0.960
A H 0.957
V H 0.977
L H 0.949
S H 0.949
E H 0.962
Y H 0.925
F H 0.887
F H 0.879
S H 0.865
A C 0.468
P H 0.835
E H 0.807
L H 0.851
F H 0.881
A H 0.884
P H 0.873
R H 0.852
F H 0.681
P H 0.915
A H 0.963
L H 0.987
W H 0.994
Q H 0.993
R H 0.991
F H 0.991
C H 0.983
H H 0.967
F H 0.928
Y H 0.783
R H 0.594
Q C 0.391
D C 0.803
P H 0.808
L H 0.892
A H 0.903
R H 0.921
R H 0.905
R H 0.834
E H 0.759
N H 0.680
G H 0.599
L H 0.501
Q H 0.375
D C 0.458
E H 0.490
G H 0.636
D H 0.666
R H 0.596
R H 0.558
I H 0.479
V C 0.411
H C 0.868
END