# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.2635	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.5410	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
2q22A	139	16.84		
1otjA	283	18.67	b.82.2.5	93517
1qreA	247	28.11	b.81.1.5	28066
1xo0A	324	35.23	a.60.9.1,d.163.1.1	115674,115675
1uu3A	310	46.34	d.144.1.7	99999
1t07A	94	47.26	d.279.1.1	106196
1jayA	212	53.93	c.2.1.6	66478
1iazA	179	61.57	b.97.1.1	62131
2cbyA	208	61.74	c.14.1.1	130202
2a0uA	383	64.37		
1gwyA	175	64.85	b.97.1.1	83356
2qniA	219	68.28		
1uxyA	340	68.94	d.145.1.2,d.146.1.1	41748,41761
2e62A	61	71.58		
1vf8A	377	75.91	c.1.8.5,d.26.3.1	120029,120030
2os5A	119	78.19		
1d2kA	392	83.33	c.1.8.5,d.26.3.1	29008,38442
2dg7A	195	86.94		
2ebnA	289	88.41	c.1.8.5	28990