# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1044	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.1166	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1xo0A	324	8.813	a.60.9.1,d.163.1.1	115674,115675
1j0mA	752	13.35	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
2q22A	139	13.52		
1el4A	195	19.69	a.39.1.5	59453
1vjfA	180	22.60	d.116.1.1	100809
1zybA	232	27.51	a.4.5.4,b.82.3.2	125815,125816
1otjA	283	29.97	b.82.2.5	93517
1u7eB	154	32.12		
2qniA	219	32.63		
2om6A	235	33.08		
1satA	471	37.27	b.80.7.1,d.92.1.6	28014,40300
1jayA	212	38.68	c.2.1.6	66478
2bv6A	142	40.90		
4crxA	322	41.15	a.60.9.1,d.163.1.1	18095,42155
1kbuA	349	43.03	a.60.9.1,d.163.1.1	72284,72285
2ebnA	289	46.26	c.1.8.5	28990
2pexA	153	46.39		
1hkkA	364	47.07	c.1.8.5,d.26.3.1	90634,90635
1jndA	420	47.85	c.1.8.5,d.26.3.1	71757,71758
1o6eA	235	50.08	b.57.1.1	81083
1fgkA	310	50.59	d.144.1.7	41693
2os5A	119	54.83		
1awdA	94	58.96	d.15.4.1	37673
1owqA	361	60.45	c.1.8.5,d.26.3.1	104041,104042
1d2kA	392	63.21	c.1.8.5,d.26.3.1	29008,38442
1hv9A	456	64.72	b.81.1.4,c.68.1.5	28060,34518
1z91A	147	65.69	a.4.5.28	124736
2d93A	134	68.89		
1vf8A	377	69.16	c.1.8.5,d.26.3.1	120029,120030
2pi6A	361	69.43		
1lg2A	365	70.29	c.1.8.5,d.26.3.1	77950,77951
1crxA	322	70.79	a.60.9.1,d.163.1.1	18097,42157
1go8P	462	70.83	b.80.7.1,d.92.1.6	76247,76248
1jf2A	195	71.62	a.39.1.5	62930
2ywwA	149	71.69		
2z69A	154	71.79		
1t07A	94	75.66	d.279.1.1	106196
1h6lA	353	76.19	b.68.3.1	60687
1y7mA	164	76.37	b.160.1.1,d.7.1.1	122696,122697
1a70A	97	78.96	d.15.4.1	37678
1gwyA	175	81.34	b.97.1.1	83356
2oqjC	21	84.17		
1iazA	179	85.40	b.97.1.1	62131
2bs3A	656	86.05	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1i39A	225	86.42	c.55.3.1	61585
1pmnA	364	86.82	d.144.1.7	94907
3crxA	343	89.72	a.60.9.1,d.163.1.1	18101,42161