# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.06815	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.2050	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1otjA	283	29.87	b.82.2.5	93517
2q22A	139	33.21		
1t07A	94	39.45	d.279.1.1	106196
1nu5A	370	41.54	c.1.11.2,d.54.1.1	92183,92184
1xo0A	324	46.01	a.60.9.1,d.163.1.1	115674,115675
2o5cA	659	48.77		
2e62A	61	50.75		
2os5A	119	53.06		
1i1iP	681	56.35	d.92.1.5	40297
1gwyA	175	58.49	b.97.1.1	83356
1jayA	212	60.40	c.2.1.6	66478
2oocA	113	64.38		
1satA	471	66.50	b.80.7.1,d.92.1.6	28014,40300
2qniA	219	71.44		
2pl5A	366	79.76		
1iazA	179	80.60	b.97.1.1	62131
1kd6A	179	81.13	b.97.1.1	68459
2ebnA	289	81.59	c.1.8.5	28990
1lmeA	176	82.64	d.167.1.1	84629
1sxjC	340	83.55	a.80.1.1,c.37.1.20	106085,106086
1oaaA	259	83.84	c.2.1.2	29829
1wf3A	301	88.89	c.37.1.8,d.52.3.1	114574,114575
2aaaA	484	89.98	b.71.1.1,c.1.8.1	27777,28764