# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqyA 523 0.1224 d.92.1.14,d.166.1.1 123903,123904 1j7nA 776 0.1818 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2q22A 139 5.417 2os5A 119 11.76 1iazA 179 11.99 b.97.1.1 62131 1j0mA 752 13.42 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2oocA 113 21.35 1hkkA 364 25.60 c.1.8.5,d.26.3.1 90634,90635 1zybA 232 28.53 a.4.5.4,b.82.3.2 125815,125816 1gwyA 175 31.55 b.97.1.1 83356 2guyA 478 33.06 b.71.1.1,c.1.8.1 135754,135755 1o6eA 235 34.00 b.57.1.1 81083 1otjA 283 36.65 b.82.2.5 93517 1rkpA 326 37.83 a.211.1.2 97620 1vf8A 377 39.60 c.1.8.5,d.26.3.1 120029,120030 1kd6A 179 39.78 b.97.1.1 68459 1tbfA 347 41.15 a.211.1.2 106743 1zklA 353 41.98 1lg2A 365 42.72 c.1.8.5,d.26.3.1 77950,77951 1jndA 420 43.43 c.1.8.5,d.26.3.1 71757,71758 1el4A 195 44.69 a.39.1.5 59453 1lmlA 478 45.96 d.92.1.3 40295 1owqA 361 46.60 c.1.8.5,d.26.3.1 104041,104042 1iab 200 48.37 1u7eB 154 49.51 1v7oA 165 49.56 d.67.1.2 100480 2aaaA 484 49.68 b.71.1.1,c.1.8.1 27777,28764 2ivyA 101 50.29 1goiA 499 50.47 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1t07A 94 50.60 d.279.1.1 106196 2inwA 133 51.14 d.110.8.1 137533 1rgs 288 51.29 1octC 156 51.75 a.4.1.1,a.35.1.1 15991,17017 2pqqA 149 52.50 1jf2A 195 52.52 a.39.1.5 62930 1w41A 101 53.09 3b64A 112 54.01 1v4pA 157 54.15 d.67.1.2 113533 1t1dA 100 55.73 d.42.1.2 38637 1e9lA 377 56.17 c.1.8.5,d.26.3.1 59395,59396 2cbyA 208 56.28 c.14.1.1 130202 1kuh 132 60.74 1ahjA 207 61.88 d.149.1.1 41774 1z1lA 345 63.31 2qneA 495 65.15 1satA 471 65.38 b.80.7.1,d.92.1.6 28014,40300 1au7A 146 66.32 a.4.1.1,a.35.1.1 15995,17021 1fl1A 230 67.27 b.57.1.1 27023 1vp6A 138 70.75 b.82.3.2 113939 1wb0A 445 71.28 c.1.8.5,d.26.3.1 120825,120826 1af0A 471 72.24 b.80.7.1,d.92.1.6 28017,40301 1tbbA 332 73.09 a.211.1.2 106741 2amyA 246 73.37 c.108.1.10 127026 2pi6A 361 73.77 2qn6A 414 74.62 2ahjA 206 74.70 d.149.1.1 41772 1e3oC 160 75.54 a.4.1.1,a.35.1.1 59197,59198 2rkhA 180 81.30 1gifA 115 81.60 d.80.1.3 39837 1du0A 57 84.89 a.4.1.1 15974 2h28A 130 85.94 d.110.8.1 135995 2cs2A 134 86.41 1nu5A 370 87.21 c.1.11.2,d.54.1.1 92183,92184 1r1hA 696 89.58 d.92.1.4 104756