# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.3172	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.5484	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1otjA	283	21.00	b.82.2.5	93517
2q22A	139	27.52		
1xo0A	324	38.46	a.60.9.1,d.163.1.1	115674,115675
1iazA	179	39.12	b.97.1.1	62131
1gwyA	175	39.92	b.97.1.1	83356
2o5cA	659	45.84		
1satA	471	52.70	b.80.7.1,d.92.1.6	28014,40300
1d2kA	392	62.09	c.1.8.5,d.26.3.1	29008,38442
1vf8A	377	63.76	c.1.8.5,d.26.3.1	120029,120030
1qreA	247	63.90	b.81.1.5	28066
1kd6A	179	65.61	b.97.1.1	68459
1t07A	94	68.27	d.279.1.1	106196
1jayA	212	71.32	c.2.1.6	66478
2e62A	61	73.29		
1uu3A	310	74.40	d.144.1.7	99999
1iab	200	75.71		
2dg7A	195	78.50		
1hkkA	364	78.59	c.1.8.5,d.26.3.1	90634,90635
2ahjA	206	78.96	d.149.1.1	41772
1e9lA	377	79.56	c.1.8.5,d.26.3.1	59395,59396
2qniA	219	82.14		
2os5A	119	84.35		
2ebnA	289	85.41	c.1.8.5	28990
1i1iP	681	85.94	d.92.1.5	40297
1bqbA	301	89.06	d.92.1.2	58962
1c7kA	132	89.93	d.92.1.1	59078