# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqyA 523 0.003391 d.92.1.14,d.166.1.1 123903,123904 1j7nA 776 0.01343 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2b7kA 200 0.6607 c.47.1.10 128042 1db1A 259 1.007 a.123.1.1 19329 1gw1A 376 1.209 c.1.8.3 76361 1el4A 195 1.213 a.39.1.5 59453 1q7eA 428 2.932 c.123.1.1 96035 1jf2A 195 3.166 a.39.1.5 62930 1si6X 282 3.436 d.151.1.2 118968 1jqoA 970 4.946 c.1.12.3 77160 2qo3A 915 5.616 1j9yA 385 5.703 c.1.8.3 62791 1ks8A 433 5.734 a.102.1.2 77519 1ea9C 583 6.581 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2o5cA 659 7.565 2vccA 891 7.601 1mqeA 207 7.984 d.113.1.1 91394 1qreA 247 9.397 b.81.1.5 28066 2obtA 327 9.434 1m2vB 926 9.595 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78497,78498,78499,78500,78501 1yw1A 442 10.03 c.1.16.4 124130 2e4tA 519 11.35 2om6A 235 12.23 2aaxA 275 12.26 1lmeA 176 12.28 d.167.1.1 84629 1anv 356 13.21 9wgaA 171 14.64 g.3.1.1,g.3.1.1,g.3.1.1,g.3.1.1 44000,44001,44002,44003 2ffeA 311 17.97 c.143.1.1 133381 1xrsA 516 18.74 c.1.19.4 115883 1xo0A 324 19.13 a.60.9.1,d.163.1.1 115674,115675 2q22A 139 21.08 1uxyA 340 21.28 d.145.1.2,d.146.1.1 41748,41761 1amy 403 22.14 2a1dD 329 23.61 2ghsA 326 23.69 b.68.6.1 135209 2c92A 160 24.46 1uu3A 310 28.07 d.144.1.7 99999 2ax9A 256 28.62 a.123.1.1 127481 1g33A 73 30.86 a.39.1.4 65121 2cmuA 342 33.95 2d0tA 406 34.17 a.266.1.2 131093 1m7vA 363 34.20 d.174.1.1 78748 2de0X 526 34.55 3ceiA 213 34.83 1satA 471 35.07 b.80.7.1,d.92.1.6 28014,40300 3cz8A 319 36.17 1qg4A 216 36.51 c.37.1.8 32035 2q3uA 383 36.65 d.126.1.6 139809 2r60A 499 36.71 2ptzA 432 36.86 1n2aA 201 38.53 a.45.1.1,c.47.1.5 91553,91554 1g0dA 695 39.67 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1go8P 462 40.20 b.80.7.1,d.92.1.6 76247,76248 1aopA 497 40.68 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1w0pA 781 41.54 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1ur1A 378 41.55 c.1.8.3 99804 1a28A 256 42.28 a.123.1.1 19290 1kblA 873 42.52 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1j1iA 296 43.58 c.69.1.10 83977 2p54A 267 44.04 a.123.1.1 139497 2fkzA 155 44.34 a.25.1.1 133688 2cbyA 208 45.20 c.14.1.1 130202 1cs0A 1073 45.47 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2dkfA 431 46.47 1wf3A 301 47.37 c.37.1.8,d.52.3.1 114574,114575 2dg7A 195 47.82 1x8mA 288 48.10 b.82.1.13 109516 2b0rA 202 50.49 2q4aA 330 50.62 b.82.2.8 139839 2e62A 61 50.80 1t07A 94 50.91 d.279.1.1 106196 1u0mA 382 51.03 c.95.1.2,c.95.1.2 107557,107558 2bryA 497 51.88 1exrA 148 52.50 a.39.1.5 17299 1pt7A 437 52.87 c.123.1.1 95093 1n5nA 180 54.16 d.167.1.1 85336 1vgvA 384 55.64 c.87.1.3 100608 2pnqA 467 57.02 1ouwA 152 57.26 b.77.3.1 93571 2qniA 219 57.76 1x7oA 287 57.89 1iab 200 57.95 1c3pA 375 58.03 c.42.1.2 32606 1pioA 257 58.53 e.3.1.1 42719 1oaoC 729 59.04 e.26.1.3 86746 1s9pA 227 60.26 a.123.1.1 105384 1fgkA 310 62.79 d.144.1.7 41693 1o66A 275 62.93 c.1.12.8 92547 2chdA 142 63.29 1sw2A 275 65.94 c.94.1.1 106064 1crxA 322 66.87 a.60.9.1,d.163.1.1 18097,42157 2dg1A 333 67.57 b.68.6.1 131493 1arbA 268 67.76 b.47.1.1 25766 2v74B 346 68.06 2javA 279 68.65 d.144.1.7 138243 1i1iP 681 69.03 d.92.1.5 40297 1ohlA 342 69.11 c.1.10.3 87035 2cvxA 888 69.17 1g9mG 321 70.52 d.172.1.1 42492 2hx0A 154 71.52 d.290.1.3 136830 1k9uA 78 72.09 a.39.1.10 84348 1m6nA 802 72.15 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1eyeA 280 72.34 c.1.21.1 29672 1nuiA 255 75.18 e.13.1.2,g.41.3.2 86194,86195 1jlwA 219 76.55 a.45.1.1,c.47.1.5 71741,71742 1bkcI 256 76.91 d.92.1.10 40334 1a0dA 440 77.01 c.1.15.3 29533 1a70A 97 77.12 d.15.4.1 37678 3c4zA 543 78.65 2r7dA 469 78.72 1s4bP 674 79.65 d.92.1.5 105252 1ad1A 266 81.30 c.1.21.1 29668 2ga8A 359 82.73 2opoA 86 84.18 a.39.1.10 139209 1v4pA 157 86.08 d.67.1.2 113533 2q8xA 331 88.93 2z61A 370 89.12 1iabA 200 89.23 d.92.1.8 40312 2zctA 249 89.62