# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1302	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.1592	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1otjA	283	27.26	b.82.2.5	93517
2q22A	139	29.02		
1satA	471	38.08	b.80.7.1,d.92.1.6	28014,40300
1xo0A	324	46.24	a.60.9.1,d.163.1.1	115674,115675
1gwyA	175	53.96	b.97.1.1	83356
1iazA	179	54.60	b.97.1.1	62131
1t6eX	381	56.19	b.50.1.2	106564
1hkkA	364	56.79	c.1.8.5,d.26.3.1	90634,90635
1bqbA	301	58.99	d.92.1.2	58962
1t07A	94	63.15	d.279.1.1	106196
2cbyA	208	66.03	c.14.1.1	130202
1jndA	420	66.92	c.1.8.5,d.26.3.1	71757,71758
2ebnA	289	68.22	c.1.8.5	28990
1iab	200	73.21		
1lg2A	365	80.92	c.1.8.5,d.26.3.1	77950,77951
1lmeA	176	84.92	d.167.1.1	84629
1jayA	212	88.48	c.2.1.6	66478