# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.3402	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.6835	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
2pxxA	215	6.612		
1j0mA	752	24.79	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
2os5A	119	25.81		
1iazA	179	26.03	b.97.1.1	62131
1gwyA	175	31.63	b.97.1.1	83356
2q22A	139	32.20		
1kuh	132	32.63		
1ahjA	207	40.31	d.149.1.1	41774
1rgs	288	41.90		
1kd6A	179	42.71	b.97.1.1	68459
1wf3A	301	48.90	c.37.1.8,d.52.3.1	114574,114575
2ovxA	159	50.57	d.92.1.11	139388
1hfcA	169	55.29	d.92.1.11	40335
1satA	471	60.71	b.80.7.1,d.92.1.6	28014,40300
1y93A	159	64.04	d.92.1.11	122772
1zkpA	268	64.48	d.157.1.9	125205
1u7eB	154	67.42		
2ahjA	206	68.95	d.149.1.1	41772
1ru4A	400	73.46	b.80.1.9	97836
1zybA	232	73.81	a.4.5.4,b.82.3.2	125815,125816
2oocA	113	74.88		
2or2A	296	84.87		
1rl3A	288	87.09	b.82.3.2,b.82.3.2	104975,104976