# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.08286	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.1313	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
2pxxA	215	9.942		
2cbyA	208	11.30	c.14.1.1	130202
2q22A	139	21.12		
2oocA	113	29.47		
2bmfA	451	32.05	c.37.1.14,c.37.1.14	128791,128792
1ru4A	400	32.98	b.80.1.9	97836
1j0mA	752	37.61	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
2px0A	296	48.55		
1kuh	132	53.31		
2os5A	119	54.19		
1zkpA	268	54.53	d.157.1.9	125205
1zybA	232	55.12	a.4.5.4,b.82.3.2	125815,125816
1wr2A	238	59.55		
1t07A	94	60.44	d.279.1.1	106196
2guyA	478	62.76	b.71.1.1,c.1.8.1	135754,135755
1kd6A	179	63.06	b.97.1.1	68459
2inwA	133	65.77	d.110.8.1	137533
2aaaA	484	66.05	b.71.1.1,c.1.8.1	27777,28764
2e1dA	331	70.22		
1bli	483	71.34		
2fb6A	117	74.62		
1j8mF	297	76.33	a.24.13.1,c.37.1.10	62742,62743
2a0uA	383	80.52		
1m7xA	617	82.94	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2c40A	312	83.43		
1j8yF	297	86.10	a.24.13.1,c.37.1.10	62747,62748
1wfuA	120	86.14	b.1.2.1	114593
1zcaA	359	86.58	a.66.1.1,c.37.1.8	124897,124898
1wf3A	301	89.51	c.37.1.8,d.52.3.1	114574,114575