# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqyA 523 0.3734 d.92.1.14,d.166.1.1 123903,123904 1r1hA 696 1.065 d.92.1.4 104756 1j7nA 776 1.557 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1dmtA 696 2.636 d.92.1.4 40296 1jqhA 308 3.469 d.144.1.7 71793 1fgkA 310 3.530 d.144.1.7 41693 2javA 279 3.727 d.144.1.7 138243 1n3yA 198 6.058 c.62.1.1 79976 2oo3A 283 6.460 1t46A 313 6.762 d.144.1.7 106397 2reiA 318 6.933 1tadA 324 7.946 a.66.1.1,c.37.1.8 18194,32077 3brbA 313 8.856 2q22A 139 14.40 2c40A 312 14.67 2ejqA 130 15.98 1mp8A 281 17.92 d.144.1.7 91384 1ir3A 306 18.42 d.144.1.7 41702 1jpaA 312 19.61 d.144.1.7 67011 3bkbA 377 20.24 3cc6A 281 20.61 1lbd 282 22.50 2eb2A 334 24.19 1to6A 371 26.80 c.141.1.1 107170 2p91A 285 28.19 1zgyA 272 28.42 a.123.1.1 125064 1lufA 343 28.75 d.144.1.7 78223 1wa5C 960 29.13 a.118.1.1 114433 1o6yA 299 29.84 d.144.1.7 81106 1ee4A 423 30.39 a.118.1.1 19128 3bu3A 306 32.01 2p54A 267 32.25 a.123.1.1 139497 1mvwA 840 34.17 i.15.1.1 79523 2ivsA 314 34.82 3cblA 377 34.89 3c1lA 188 35.11 1opjA 293 36.92 d.144.1.7 87230 830cA 168 37.06 d.92.1.11 40400 3bv4A 341 37.46 2ct9A 208 37.60 1wvfA 520 40.73 d.58.32.1,d.145.1.1 121337,121338 1cw0A 155 41.77 c.52.1.15 33333 1prgA 270 44.48 a.123.1.1 19314 1cex 214 44.59 1y93A 159 45.67 d.92.1.11 122772 2owbA 335 45.86 2z1eA 342 46.82 2ousA 331 47.02 3cgxA 242 47.74 1gpmA 525 48.37 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2c43A 323 48.94 1m3uA 264 49.69 c.1.12.8 84784 1jf3A 147 50.47 a.1.1.2 71642 2fnuA 375 51.32 c.67.1.4 133831 1qr0A 228 52.47 d.150.1.1,d.150.1.1 59038,59039 1z7wA 322 52.54 c.79.1.1 124674 1cexA 214 52.86 c.69.1.30 31285 1gp6A 356 52.90 b.82.2.1 65441 2j7yA 255 53.28 a.123.1.1 138130 2prgA 271 55.95 a.123.1.1 19311 1a76 326 56.15 1tbfA 347 56.99 a.211.1.2 106743 1svsA 353 57.93 c.37.1.8 106051 1zu0A 529 58.28 1iabA 200 58.69 d.92.1.8 40312 1l7vC 249 58.77 c.37.1.12 73674 2i1mA 333 59.05 1b0uA 262 60.63 c.37.1.12 32370 1mf7A 194 62.06 c.62.1.1 84937 2aeuA 374 62.34 c.67.1.8 126646 2hpkA 208 68.10 1jk3A 158 68.47 d.92.1.11 66790 1xiuA 230 68.79 1vddA 228 69.37 e.49.1.1 108519 1fbaA 361 69.84 c.1.10.1 29120 2ibaA 302 70.37 d.96.1.4,d.96.1.4 137178,137179 1xyzA 347 70.98 c.1.8.3 28804 1din 236 71.10 1d4xA 375 72.03 c.55.1.1,c.55.1.1 59107,59108 1u59A 287 72.40 d.144.1.7 107681 2r8qA 359 72.42 1p4oA 322 72.83 d.144.1.7 87775 1g5yA 238 73.91 a.123.1.1 60294 1ujnA 348 74.10 e.22.1.1 99460 1z1lA 345 74.30 1o2dA 371 74.65 e.22.1.2 86591 1rom 403 74.73 2hd1A 326 75.61 a.211.1.2 136338 1hfcA 169 76.83 d.92.1.11 40335 1dqsA 393 78.95 e.22.1.1 43347 1zklA 353 78.97 2j41A 207 81.59 1el4A 195 81.60 a.39.1.5 59453 3cbgA 232 81.86 1f0jA 377 82.76 a.211.1.2 19346 2hziA 277 83.73 2o08A 188 84.81 1ovlA 271 84.85 a.123.1.1 87455 1rzuA 485 85.31 c.87.1.8 105140 1vp6A 138 86.76 b.82.3.2 113939 1oakA 196 89.00 c.62.1.1 34138 1ps1A 337 89.62 a.128.1.4 19450