Best Alignments for T0489

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1yqyA	2.1700e-01	1yqyA/T0489-1yqyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.92.1.14 d.166.1.1
2q22A	1.6950e+01	2q22A/T0489-2q22A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gpuA	2.1321e+01	2gpuA/T0489-2gpuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2j7yA	2.2213e+01	2j7yA/T0489-2j7yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1s9pA	2.3349e+01	1s9pA/T0489-1s9pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1ie9A	2.7429e+01	1ie9A/T0489-1ie9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2g8lA	3.0283e+01	2g8lA/T0489-2g8lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.50.1.1
2h79A	3.4211e+01	2h79A/T0489-2h79A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fcyA	3.5256e+01	1fcyA/T0489-1fcyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2p54A	3.8287e+01	2p54A/T0489-2p54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ctjA	3.9249e+01	1ctjA/T0489-1ctjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.3.1.1
2e62A	4.0159e+01	2e62A/T0489-2e62A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2btdA	4.4908e+01	2btdA/T0489-2btdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zgyA	4.5239e+01	1zgyA/T0489-1zgyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1pzlA	4.7527e+01	1pzlA/T0489-1pzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1sqnA	4.7913e+01	1sqnA/T0489-1sqnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2aaxA	4.8292e+01	2aaxA/T0489-2aaxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lv2A	4.8537e+01	1lv2A/T0489-1lv2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2ovxA	4.8925e+01	2ovxA/T0489-2ovxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ymtA	4.9564e+01	1ymtA/T0489-1ymtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001