# List of top-scoring protein chains for T0489.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.05181	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.07402	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1pwuA	776	0.4598	d.92.1.14,d.92.1.14,d.166.1.1	95244,95245,95246
2fa3A	450	18.87		
2f82A	450	18.91		
2fujA	137	31.49	d.38.1.1	134175
1s1gA	124	39.79	d.42.1.2	98346
1zkoA	136	42.53		
1w6tA	444	43.76	c.1.11.1,d.54.1.1	120670,120671
1xwdC	252	45.33		
2i2rA	144	47.22		
2nz0B	140	47.39		
2d0tA	406	49.07	a.266.1.2	131093
2ob9A	130	50.42		
2vccA	891	62.81		
1rm8A	169	65.88	d.92.1.11	97660
1tzqA	175	76.71	b.97.1.1	107522
3b8sA	584	78.21		
2q88A	257	78.50		
1kd6A	179	78.50	b.97.1.1	68459
1iazA	179	78.51	b.97.1.1	62131
1nn7A	105	82.98	d.42.1.2	85894
1e8nA	710	83.65	b.69.7.1,c.69.1.4	27675,34643
1h2xA	710	85.21	b.69.7.1,c.69.1.4	76598,76599
1vz2A	710	87.02	b.69.7.1,c.69.1.4	108945,108946
1dtpA	190	87.36	d.166.1.1	42248
1o6fA	710	87.39	b.69.7.1,c.69.1.4	81085,81086
1h2wA	710	87.73	b.69.7.1,c.69.1.4	76596,76597
1j3uA	468	87.78	a.127.1.1	84078
1vz3A	710	87.93	b.69.7.1,c.69.1.4	108947,108948
1o07A	358	88.07	e.3.1.1	92390
1o6gA	710	88.18	b.69.7.1,c.69.1.4	81087,81088
1e5tA	710	88.19	b.69.7.1,c.69.1.4	27676,34644
2jg0A	535	89.82