# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1401	d.92.1.14,d.166.1.1	123903,123904
1ctjA	89	20.77	a.3.1.1	15798
2izrA	330	24.53		
1b6g	310	25.93		
2q22A	139	27.39		
2g8lA	299	27.87	e.50.1.1	134775
1zd3A	555	30.96	c.108.1.2,c.69.1.11	124930,124931
1fcyA	236	33.82	a.123.1.1	19282
2j7yA	255	33.82	a.123.1.1	138130
1s9pA	227	37.47	a.123.1.1	105384
2e62A	61	46.39		
1zp2A	235	50.89		
2gpuA	230	58.01	a.123.1.1	135493
1imjA	210	63.76	c.69.1.23	71246
1k7iA	479	72.46	b.80.7.1,d.92.1.6	77281,77282
1vmiA	355	72.72	c.77.1.5	113678
3cjhB	64	80.97		
1jhgA	101	82.90	a.4.12.1	19009
2e3jA	356	85.21		
1tzfA	259	85.75	c.68.1.13	107476