# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1003	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	9.050		
2g8lA	299	17.74	e.50.1.1	134775
1ctjA	89	28.29	a.3.1.1	15798
1jhgA	101	29.23	a.4.12.1	19009
2pigA	334	29.27		
1a9nB	96	30.52	d.58.7.1	39165
1zp2A	235	30.53		
1y7mA	164	33.00	b.160.1.1,d.7.1.1	122696,122697
3cjhB	64	33.70		
2javA	279	36.89	d.144.1.7	138243
1oihA	301	38.94	b.82.2.5	93051
1ew0A	130	40.79	d.110.3.2	40905
1k7iA	479	46.98	b.80.7.1,d.92.1.6	77281,77282
1nu4A	97	49.88	d.58.7.1	80731
2izrA	330	52.64		
1qddA	144	55.02	d.169.1.1	42324
3bc9A	599	55.48		
2e62A	61	58.77		
1s9pA	227	61.92	a.123.1.1	105384
3cqbA	107	62.22		
1ka2A	499	63.82	d.92.1.5	77305
2bhuA	602	65.08	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
2ywwA	149	67.04		
2v0uA	146	76.30		
2dj6A	115	78.83		
1iab	200	79.35		
2d93A	134	79.45		
2j7tA	302	82.07		
2opoA	86	82.46	a.39.1.10	139209
1fcyA	236	82.62	a.123.1.1	19282
1v9yA	167	84.47	d.110.3.2	108454
1tvfA	369	85.22	b.105.1.2,e.3.1.1	107358,107359
1s7iA	124	89.13	d.58.4.9	105353
1ctj	89	89.55		
2fstX	367	90.00