# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07759	d.92.1.14,d.166.1.1	123903,123904
1ctjA	89	6.364	a.3.1.1	15798
2q22A	139	13.67		
2g8lA	299	18.56	e.50.1.1	134775
1fcyA	236	18.80	a.123.1.1	19282
2e62A	61	19.66		
2j7yA	255	20.41	a.123.1.1	138130
1hyuA	521	25.99	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
1jhgA	101	33.38	a.4.12.1	19009
2bhuA	602	35.83	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1cnoA	87	36.97	a.3.1.1	15814
1ctj	89	37.69		
1hq8A	123	38.86	d.169.1.1	61127
1s9pA	227	39.66	a.123.1.1	105384
3bc9A	599	41.18		
1w50A	411	45.36	b.50.1.2	109173
2gpuA	230	47.50	a.123.1.1	135493
2gimA	106	50.56	b.6.1.1	135244
1tzfA	259	51.91	c.68.1.13	107476
2izrA	330	51.94		
1atlA	202	56.61	d.92.1.9	40322
1odzA	386	56.92	c.1.8.3	86889
3cjhB	64	62.29		
2f8aA	208	71.67	c.47.1.10	133119
1chd	203	80.58		
1zd3A	555	81.02	c.108.1.2,c.69.1.11	124930,124931
1jdcA	429	81.20	b.71.1.1,c.1.8.1	27789,28776
3ct2A	382	81.50		
1lv2A	229	82.65	a.123.1.1	78230
1oihA	301	85.88	b.82.2.5	93051
1upvA	257	86.03	a.123.1.1	113398
2ux0A	143	87.40		
1b6g	310	88.45