# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07493	d.92.1.14,d.166.1.1	123903,123904
1ctjA	89	8.346	a.3.1.1	15798
2q22A	139	14.84		
2e62A	61	14.99		
2g8lA	299	16.62	e.50.1.1	134775
2j7yA	255	18.54	a.123.1.1	138130
1fcyA	236	19.48	a.123.1.1	19282
1jhgA	101	29.67	a.4.12.1	19009
2bhuA	602	34.16	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1s9pA	227	36.18	a.123.1.1	105384
2izrA	330	38.08		
1ctj	89	39.66		
1hyuA	521	41.18	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
2gimA	106	42.83	b.6.1.1	135244
1lv2A	229	46.55	a.123.1.1	78230
1odzA	386	47.35	c.1.8.3	86889
1cnoA	87	50.53	a.3.1.1	15814
2gpuA	230	51.15	a.123.1.1	135493
3cjhB	64	61.43		
1ka2A	499	68.42	d.92.1.5	77305
1atlA	202	69.64	d.92.1.9	40322
1hq8A	123	70.40	d.169.1.1	61127
2f8aA	208	73.95	c.47.1.10	133119
1sqnA	261	74.23	a.123.1.1	105944
1f6yA	262	76.55	c.1.21.2	29673
1chd	203	77.22		
1tzfA	259	79.85	c.68.1.13	107476
1jdcA	429	82.08	b.71.1.1,c.1.8.1	27789,28776
2h79A	269	82.26		
1a9nB	96	83.61	d.58.7.1	39165
1upvA	257	85.75	a.123.1.1	113398
1rm8A	169	87.65	d.92.1.11	97660
1b6g	310	87.90		
2jcdA	345	88.10		
1pzlA	237	89.18	a.123.1.1	104393
2e3jA	356	89.86