# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.08055	d.92.1.14,d.166.1.1	123903,123904
1ctjA	89	8.047	a.3.1.1	15798
2q22A	139	15.73		
2j7yA	255	22.17	a.123.1.1	138130
1fcyA	236	24.73	a.123.1.1	19282
2g8lA	299	24.90	e.50.1.1	134775
2e62A	61	28.67		
2izrA	330	29.23		
2bhuA	602	30.96	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1hyuA	521	31.96	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
1ctj	89	36.69		
1jhgA	101	39.89	a.4.12.1	19009
1cnoA	87	50.14	a.3.1.1	15814
1s9pA	227	50.79	a.123.1.1	105384
2gimA	106	67.06	b.6.1.1	135244
3cjhB	64	69.64		
1hq8A	123	71.17	d.169.1.1	61127
2gpuA	230	74.66	a.123.1.1	135493
1tzfA	259	76.82	c.68.1.13	107476
1b6g	310	77.53		
1w50A	411	84.62	b.50.1.2	109173