# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1120	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	1.905		
2g8lA	299	5.270	e.50.1.1	134775
2os5A	119	15.18		
3b64A	112	20.19		
3bc9A	599	20.81		
1mswD	883	29.65	e.8.1.3	79427
1w50A	411	30.86	b.50.1.2	109173
1bplB	294	36.36	b.71.1.1	27716
3ct2A	382	38.72		
2gdgA	114	39.12	d.80.1.3	135015
2inwA	133	44.36	d.110.8.1	137533
2yqzA	263	44.66		
1s7iA	124	46.55	d.58.4.9	105353
2p3xA	339	50.50		
1w41A	101	53.54		
1hyuA	521	56.48	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
2p35A	259	56.74		
1gd0A	122	58.31	d.80.1.3	39834
2d93A	134	59.57		
3bqsA	93	61.41		
3cjhB	64	62.16		
1iab	200	62.52		
1wmzA	140	62.57	d.169.1.1	109422
3chvA	284	63.74		
1cnoA	87	64.37	a.3.1.1	15814
1rm8A	169	65.58	d.92.1.11	97660
1iazA	179	66.03	b.97.1.1	62131
1mp8A	281	67.41	d.144.1.7	91384
2j7yA	255	67.86	a.123.1.1	138130
1qddA	144	68.24	d.169.1.1	42324
1e43A	483	69.91	b.71.1.1,c.1.8.1	59217,59218
1so2A	420	75.65	a.211.1.2	98936
1cdzA	96	76.82	c.15.1.1	30925
1f8rA	498	77.11	c.3.1.2,d.16.1.5	30410,37974
1tbfA	347	79.42	a.211.1.2	106743
2couA	109	80.50		
1jznA	135	81.76	d.169.1.1	84262
2cvjA	180	82.62		
1atlA	202	82.81	d.92.1.9	40322
2oo3A	283	83.21		
1uhvA	500	84.85	b.71.1.2,c.1.8.3	99402,99403
3bjuA	521	85.74		
1uz3A	102	86.78		
2hm7A	310	87.03		
2izpA	303	87.12	a.250.1.1	137826
2h79A	269	87.86