# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1543	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	9.606		
1ctjA	89	11.86	a.3.1.1	15798
2g8lA	299	18.99	e.50.1.1	134775
1cnoA	87	27.50	a.3.1.1	15814
2izrA	330	27.67		
1jhgA	101	30.00	a.4.12.1	19009
2e62A	61	33.71		
1hq8A	123	45.36	d.169.1.1	61127
1zp2A	235	47.51		
2bhuA	602	50.19	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1oihA	301	51.63	b.82.2.5	93051
1zd3A	555	51.65	c.108.1.2,c.69.1.11	124930,124931
1fcyA	236	54.67	a.123.1.1	19282
1hyuA	521	54.72	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
1s9pA	227	56.76	a.123.1.1	105384
1jdcA	429	59.10	b.71.1.1,c.1.8.1	27789,28776
3bc9A	599	64.02		
2j7yA	255	64.28	a.123.1.1	138130
1ctj	89	66.66		
3cjhB	64	66.68		
1wgzA	510	70.06		
1rm8A	169	74.22	d.92.1.11	97660
1tzfA	259	74.67	c.68.1.13	107476
2gpuA	230	84.22	a.123.1.1	135493
1b6g	310	88.83