# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.01230	d.92.1.14,d.166.1.1	123903,123904
2aaxA	275	1.468		
1gcyA	527	2.138	b.71.1.1,c.1.8.1	27788,28775
1jdcA	429	2.523	b.71.1.1,c.1.8.1	27789,28776
1yw1A	442	3.549	c.1.16.4	124130
1ie9A	259	3.801	a.123.1.1	62318
1odzA	386	3.887	c.1.8.3	86889
2q40A	367	4.116	e.50.1.1	139814
1iznA	286	4.356	e.43.1.1	83847
1hyuA	521	4.608	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
1e4cP	215	5.533	c.74.1.1	34969
2qo3A	915	7.723		
2izpA	303	9.223	a.250.1.1	137826
1s9pA	227	9.310	a.123.1.1	105384
1budA	197	9.419	d.92.1.9	40328
1vdzA	588	9.657		
3d3iA	761	9.882		
1ed8A	449	11.24	c.76.1.1	34988
1aop	497	11.97		
1ctjA	89	12.38	a.3.1.1	15798
2vpzA	765	12.74		
1aopA	497	12.74	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	39501,39502,41425,41426
1sqnA	261	13.48	a.123.1.1	105944
2q22A	139	14.38		
1f07A	321	16.18	c.1.16.3	59560
2gpuA	230	16.46	a.123.1.1	135493
3cmgA	667	16.52		
1twfA	1733	16.59	e.29.1.2	112725
1oihA	301	16.87	b.82.2.5	93051
2o0mA	345	19.23		
2r11A	306	20.35		
2qz7A	194	22.36		
1tcaA	317	23.71	c.69.1.17	34726
1rtu	114	24.47		
1m7vA	363	24.65	d.174.1.1	78748
3c4zA	543	26.54		
1bf2A	750	26.83	b.1.18.2,b.71.1.1,c.1.8.1	21860,27787,28774
2yvdA	431	27.67		
1tzfA	259	28.26	c.68.1.13	107476
2javA	279	28.29	d.144.1.7	138243
1tvfA	369	28.38	b.105.1.2,e.3.1.1	107358,107359
1yymG	313	29.04	d.172.1.1	124232
1q7eA	428	30.04	c.123.1.1	96035
1jhgA	101	30.31	a.4.12.1	19009
1csnA	298	30.39	d.144.1.7	41664
1tvlA	454	31.22	c.1.16.4	107366
1wgzA	510	31.63		
2pa6A	427	32.84		
2o5cA	659	32.94		
1xfiA	367	33.80	e.50.1.1	109584
2gduA	504	35.07	b.71.1.1,c.1.8.1	135032,135033
2c40A	312	36.74		
3bwxA	285	37.08		
1uhvA	500	40.16	b.71.1.2,c.1.8.3	99402,99403
1cnoA	87	40.49	a.3.1.1	15814
1mswD	883	40.91	e.8.1.3	79427
1si6X	282	41.07	d.151.1.2	118968
1amuA	563	41.44	e.23.1.1	43351
1w63A	618	43.77	i.23.1.1	109192
1vybA	238	43.91	d.151.1.1	108897
1qw9A	502	44.24	b.71.1.2,c.1.8.3	96466,96467
2eb0A	307	45.00		
2e8yA	718	45.47		
1f0lA	535	46.26	b.2.1.1,d.166.1.1,f.1.2.1	22377,42239,43382
1n46A	258	46.31	a.123.1.1	85315
2hoxA	427	46.72	c.67.1.1	136644
2ccmA	191	47.26		
1b6g	310	47.57		
2obtA	327	47.66		
1heiA	451	47.94	c.37.1.14,c.37.1.14	32463,32464
2r60A	499	48.47		
2j7yA	255	49.93	a.123.1.1	138130
4ubpC	570	50.08	b.92.1.1,c.1.9.2	28431,29053
1ctj	89	50.14		
1jdc	429	50.47		
1o66A	275	51.50	c.1.12.8	92547
1jmuB	666	51.66		
2g2kA	170	55.43		
1jqoA	970	55.58	c.1.12.3	77160
2izrA	330	56.09		
1iab	200	57.30		
1dkiA	371	58.06	d.3.1.1	37090
1vjzA	341	59.97	c.1.8.3	100838
2p9wA	334	60.90		
2p5qA	170	62.02		
1mkyA	439	62.96	c.37.1.8,c.37.1.8,d.52.5.1	79250,79251,79252
1ntyA	311	63.55	a.87.1.1,b.55.1.1	103873,103874
2e62A	61	65.07		
1sr8A	298	69.44	e.54.1.1	105959
2z1mA	345	69.94		
2ejwA	332	70.39		
1o6zA	303	71.41	c.2.1.5,d.162.1.1	81107,81108
1nqkA	381	72.28	c.1.16.4	92050
2q4aA	330	72.46	b.82.2.8	139839
2qeeA	437	72.98		
1x54A	434	73.10		
1bobA	320	73.93	d.108.1.1	40816
1va6A	518	74.54	d.128.1.4	113598
1y791	680	74.74		
1zp2A	235	75.31		
3b9oA	440	76.12		
2dkfA	431	77.21		
2pnkA	428	77.74		
2fstX	367	81.25		
2r78A	117	82.55		
3cjhB	64	82.85		
1zd3A	555	82.90	c.108.1.2,c.69.1.11	124930,124931
1y7mA	164	83.70	b.160.1.1,d.7.1.1	122696,122697
1t7rA	269	83.95	a.123.1.1	106635
2qmqA	286	84.32		
1rm8A	169	84.55	d.92.1.11	97660
2opiA	212	84.66		
2nwbA	400	87.21		
1upvA	257	88.08	a.123.1.1	113398
3cb2A	475	88.14		
1fecA	490	88.46	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2ri7A	174	88.67