# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.2113	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	11.46		
1ctjA	89	18.08	a.3.1.1	15798
2g8lA	299	18.62	e.50.1.1	134775
1jhgA	101	28.55	a.4.12.1	19009
1fcyA	236	31.07	a.123.1.1	19282
2izrA	330	33.67		
1zp2A	235	34.97		
2e62A	61	37.89		
2bhuA	602	42.93	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1cnoA	87	43.00	a.3.1.1	15814
1zd3A	555	50.25	c.108.1.2,c.69.1.11	124930,124931
3bc9A	599	51.33		
1b6g	310	54.13		
1rm8A	169	54.62	d.92.1.11	97660
2j7yA	255	61.87	a.123.1.1	138130
1jdcA	429	64.61	b.71.1.1,c.1.8.1	27789,28776
1oihA	301	66.59	b.82.2.5	93051
1s9pA	227	67.36	a.123.1.1	105384
1iab	200	68.98		
3cjhB	64	70.84		
2gimA	106	71.57	b.6.1.1	135244
1imjA	210	81.32	c.69.1.23	71246
1zgyA	272	83.00	a.123.1.1	125064
1ctj	89	84.15		
1chd	203	86.13