# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.03029	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	14.70		
1ctjA	89	16.09	a.3.1.1	15798
1s9pA	227	31.04	a.123.1.1	105384
2izrA	330	32.02		
2g8lA	299	38.59	e.50.1.1	134775
2j7yA	255	40.79	a.123.1.1	138130
2e62A	61	41.01		
1fcyA	236	43.46	a.123.1.1	19282
2bhuA	602	47.33	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
2gpuA	230	49.57	a.123.1.1	135493
1cnoA	87	53.20	a.3.1.1	15814
1jhgA	101	53.59	a.4.12.1	19009
3cjhB	64	55.94		
3bc9A	599	56.17		
1w50A	411	67.46	b.50.1.2	109173
2gimA	106	70.15	b.6.1.1	135244
1zeeA	403	73.54	a.266.1.2	124981