# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07799	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	10.11		
1ctjA	89	14.10	a.3.1.1	15798
3bc9A	599	15.29		
2bhuA	602	18.13	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
2g8lA	299	21.76	e.50.1.1	134775
2e62A	61	23.50		
1fcyA	236	27.26	a.123.1.1	19282
1jhgA	101	29.44	a.4.12.1	19009
3cjhB	64	31.25		
1s9pA	227	33.80	a.123.1.1	105384
1cnoA	87	44.97	a.3.1.1	15814
2j7yA	255	57.39	a.123.1.1	138130
1zp2A	235	58.67		
2gimA	106	63.19	b.6.1.1	135244
1jaeA	471	64.57	b.71.1.1,c.1.8.1	27773,28760
2gpuA	230	66.55	a.123.1.1	135493
1ctj	89	70.02		
1w50A	411	70.57	b.50.1.2	109173
2pigA	334	73.02		
2h79A	269	77.80		
1ka2A	499	84.08	d.92.1.5	77305