# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1113	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	18.09		
1ctjA	89	29.14	a.3.1.1	15798
2g8lA	299	32.44	e.50.1.1	134775
1fcyA	236	32.68	a.123.1.1	19282
2j7yA	255	42.42	a.123.1.1	138130
3cjhB	64	47.62		
1jhgA	101	48.66	a.4.12.1	19009
2gimA	106	50.73	b.6.1.1	135244
1w50A	411	55.92	b.50.1.2	109173
1s9pA	227	56.37	a.123.1.1	105384
2e62A	61	60.44		
1zp2A	235	66.52		
2izrA	330	66.87		
1oihA	301	67.30	b.82.2.5	93051
1cnoA	87	72.74	a.3.1.1	15814
1s7iA	124	72.86	d.58.4.9	105353
2pigA	334	75.61		
3bc9A	599	79.47		
2bhuA	602	80.45	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
1atlA	202	82.13	d.92.1.9	40322
2qr4A	587	86.88		
2gpuA	230	89.16	a.123.1.1	135493