# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.1493	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	3.384		
2g8lA	299	11.67	e.50.1.1	134775
1zeeA	403	13.68	a.266.1.2	124981
3bjuA	521	15.84		
1ctjA	89	25.17	a.3.1.1	15798
2nwbA	400	32.44		
1hq8A	123	33.44	d.169.1.1	61127
2vl7A	540	37.09		
2bce	581	39.46		
3bc9A	599	41.84		
2d93A	134	42.11		
1w41A	101	46.47		
2inwA	133	47.76	d.110.8.1	137533
1w50A	411	50.51	b.50.1.2	109173
2h28A	130	53.21	d.110.8.1	135995
1u0jA	267	66.99	c.37.1.20	107546
1gz2A	142	69.73	d.169.1.1	83392
2zdrA	349	70.53		
1s9pA	227	71.82	a.123.1.1	105384
1ctj	89	72.93		
1a3qA	285	74.37	b.1.18.1,b.2.5.3	21932,22447
1qddA	144	76.55	d.169.1.1	42324
1nz6A	101	79.99	a.2.3.1	86441
2p2vA	288	83.47		
1bplB	294	86.98	b.71.1.1	27716
1wmzA	140	88.23	d.169.1.1	109422