# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqyA 523 0.4738 d.92.1.14,d.166.1.1 123903,123904 2javA 279 2.057 d.144.1.7 138243 2ousA 331 5.216 2pqqA 149 7.475 1t46A 313 9.365 d.144.1.7 106397 1n3yA 198 11.62 c.62.1.1 79976 1cexA 214 12.04 c.69.1.30 31285 1opjA 293 13.02 d.144.1.7 87230 2gmyA 153 14.00 a.152.1.3 135398 1xbbA 291 14.20 d.144.1.7 115077 1jpaA 312 14.59 d.144.1.7 67011 1tbfA 347 14.82 a.211.1.2 106743 1obdA 306 16.09 d.143.1.1 86767 2i1mA 333 16.32 1t6cA 315 16.39 c.55.1.8,c.55.1.8 106558,106559 1mp8A 281 17.05 d.144.1.7 91384 2ovyA 362 18.24 1fgkA 310 19.16 d.144.1.7 41693 2yvqA 143 19.39 1qv1A 195 19.60 a.39.1.5 96347 1zgyA 272 20.08 a.123.1.1 125064 1k8kA 418 20.24 c.55.1.1,c.55.1.1 68305,68306 1pbeA 394 21.30 c.3.1.2,d.16.1.2 30338,37869 1qpcA 279 24.54 d.144.1.7 41685 2pvfA 334 26.86 1zu0A 529 27.29 2oo3A 283 28.54 1cex 214 29.17 1mf7A 194 30.93 c.62.1.1 84937 1ykjA 394 33.00 1p4oA 322 33.22 d.144.1.7 87775 2qolA 376 34.49 2c40A 312 36.62 2cnqA 306 38.67 d.143.1.1 130646 2ijmA 281 38.97 1a76 326 40.29 1z47A 355 40.48 2c43A 323 40.67 1sqgA 429 41.34 a.79.1.3,c.66.1.38 105912,105913 1uh5A 329 42.37 c.2.1.2 107840 1p9bA 442 42.75 c.37.1.10 94385 1ywnA 316 43.52 d.144.1.7 124161 1vjyA 303 43.81 d.144.1.7 108633 2zfoC 147 43.99 2j4dA 525 44.19 1r0pA 312 44.81 d.144.1.7 96734 1jfbA 404 45.02 a.104.1.1 66624 2qkoA 215 45.33 1o1yA 239 46.40 c.23.16.1 86554 1ps1A 337 46.46 a.128.1.4 19450 1nrjB 218 46.56 c.37.1.8 86125 2cxxA 190 46.56 c.37.1.8 131013 3b6eA 216 47.20 1g2nA 264 47.66 a.123.1.1 60227 1qz5A 375 48.48 c.55.1.1,c.55.1.1 96614,96615 2fstX 367 49.40 2hpsA 186 49.59 1ycdA 243 50.40 1qr0A 228 51.55 d.150.1.1,d.150.1.1 59038,59039 1e7uA 961 51.99 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1o6yA 299 53.68 d.144.1.7 81106 2aeuA 374 54.10 c.67.1.8 126646 2ivsA 314 54.73 1qlwA 328 55.39 c.69.1.15 34722 1w7jA 795 55.66 b.34.3.1,c.37.1.9 120688,120689 2o08A 188 57.19 2opiA 212 57.59 1a76A 326 57.95 a.60.7.1,c.120.1.2 18091,33361 1ujnA 348 58.15 e.22.1.1 99460 2hziA 277 58.54 2qeeA 437 60.34 1ijbA 202 61.02 c.62.1.1 71229 2in3A 216 61.12 3ccgA 190 62.91 1k0iA 394 63.67 c.3.1.2,d.16.1.2 67942,67943 2iz6A 176 64.11 2qsjA 154 64.86 1a9xA 1058 65.59 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 3brbA 313 65.73 1azwA 313 66.29 c.69.1.7 34658 2reiA 318 66.72 1mx0A 472 67.69 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 180lA 164 68.64 d.2.1.3 36867 2z69A 154 69.23 2it1A 362 69.72 1zaiA 363 70.10 c.1.10.1 124828 1m3uA 264 71.11 c.1.12.8 84784 2qa1A 500 71.51 1u46A 291 73.23 d.144.1.7 107656 3cc6A 281 74.79 2zfoA 140 75.76 2f7tA 227 76.74 1j5sA 463 77.51 c.1.9.8 71580 2ibaA 302 79.03 d.96.1.4,d.96.1.4 137178,137179 3cblA 377 79.68 830cA 168 80.05 d.92.1.11 40400 1tkiA 321 80.97 d.144.1.7 41638 1cjcA 460 81.59 c.3.1.1,c.4.1.1 30319,30604 2b9eA 303 85.06 c.66.1.38 128124 2r8qA 359 85.67 1r4uA 301 86.60 d.96.1.4,d.96.1.4 97047,97048 3b8dA 363 87.76 3bv4A 341 87.91 2bdwA 362 88.02 2fxuA 375 88.67 c.55.1.1,c.55.1.1 134340,134341 2qluA 314 89.34 1cnzA 363 89.56 c.77.1.1 35061 1r1hA 696 89.67 d.92.1.4 104756 1vp6A 138 89.72 b.82.3.2 113939