# List of top-scoring protein chains for T0489.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.03893	d.92.1.14,d.166.1.1	123903,123904
1j7nA	776	0.04953	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1pwuA	776	0.5587	d.92.1.14,d.92.1.14,d.166.1.1	95244,95245,95246
1xwdC	252	30.20		
2q88A	257	36.00		
2f82A	450	43.79		
2fa3A	450	44.84		
2fujA	137	47.47	d.38.1.1	134175
2i2rA	144	51.61		
2nz0B	140	52.76		
1s1gA	124	58.13	d.42.1.2	98346
2d0tA	406	63.77	a.266.1.2	131093
1hk5A	585	80.98	a.126.1.1,a.126.1.1,a.126.1.1	83536,83537,83538
2do8A	188	81.30	d.310.1.1	131597
1rm8A	169	81.35	d.92.1.11	97660
2vdbA	579	81.74		
1tf0A	572	82.17	a.126.1.1,a.126.1.1,a.126.1.1	106822,106823,106824
2bxkA	585	82.28	a.126.1.1,a.126.1.1	129431,129432
1bkeA	581	82.52	a.126.1.1,a.126.1.1,a.126.1.1	19387,19388,19389
2esgC	585	82.53	a.126.1.1,a.126.1.1	132323,132324
1hk3A	585	83.19	a.126.1.1,a.126.1.1,a.126.1.1	83530,83531,83532
1kjoA	316	83.53	d.92.1.2	77419
1nn7A	105	84.33	d.42.1.2	85894
1j3uA	468	89.63	a.127.1.1	84078