# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07555	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	11.75		
2gdrA	202	17.62		
2o36A	674	21.56		
1zgyA	272	26.37	a.123.1.1	125064
1pzlA	237	28.30	a.123.1.1	104393
1uzeA	589	30.78	d.92.1.5	108174
1nq7A	244	31.38	a.123.1.1	92047
2h1nA	567	32.77		
1fcyA	236	35.79	a.123.1.1	19282
1c7kA	132	38.61	d.92.1.1	59078
1ctjA	89	38.99	a.3.1.1	15798
2ntoA	201	46.89		
2e62A	61	47.54		
2cz2A	223	48.88		
1mpuA	138	50.43	d.169.1.1	85040
1bqbA	301	52.61	d.92.1.2	58962
1hg4A	279	59.48	a.123.1.1	19333
3c5tA	122	60.02		
1i1iP	681	61.26	d.92.1.5	40297
1ezm	301	63.25		
2gpuA	230	64.57	a.123.1.1	135493
1kapP	479	65.89	b.80.7.1,d.92.1.6	28012,40298
1kuh	132	67.32		
1njgA	250	67.51	c.37.1.20	85785
2calA	154	68.83		
1tltA	319	69.85	c.2.1.3,d.81.1.5	107135,107136
1mmqA	170	70.34	d.92.1.11	40396
2ejqA	130	75.53		
1j7nA	776	77.09	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1t07A	94	77.78	d.279.1.1	106196
1py0A	125	79.92	b.6.1.1	111645
2ajfA	597	81.10	d.92.1.5	126882
2ckiA	262	85.04		
1go7P	462	86.28	b.80.7.1,d.92.1.6	76245,76246
1satA	471	86.29	b.80.7.1,d.92.1.6	28014,40300
1n83A	270	87.84	a.123.1.1	80276