# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.05165	d.92.1.14,d.166.1.1	123903,123904
1pzlA	237	9.598	a.123.1.1	104393
2q22A	139	12.55		
1zgyA	272	14.41	a.123.1.1	125064
1nq7A	244	14.80	a.123.1.1	92047
2gdrA	202	17.10		
2gpuA	230	18.15	a.123.1.1	135493
1uzeA	589	21.15	d.92.1.5	108174
1fcyA	236	22.23	a.123.1.1	19282
1c7kA	132	25.69	d.92.1.1	59078
2o36A	674	29.90		
2e62A	61	30.67		
1ctjA	89	34.53	a.3.1.1	15798
2h1nA	567	36.87		
1ezm	301	37.93		
1n83A	270	38.00	a.123.1.1	80276
2uz8A	174	38.44		
1upvA	257	39.28	a.123.1.1	113398
3ertA	261	39.35	a.123.1.1	19292
1ovlA	271	39.57	a.123.1.1	87455
1mmqA	170	41.47	d.92.1.11	40396
1ut8A	291	44.94	a.60.7.1,c.120.1.2	99908,99909
2cz2A	223	47.07		
1xpcA	248	47.16	a.123.1.1	115738
2g8lA	299	47.25	e.50.1.1	134775
1qkmA	255	48.43	a.123.1.1	19309
2ejqA	130	50.38		
1nrlA	316	51.93	a.123.1.1	92091
1s9pA	227	53.93	a.123.1.1	105384
1py0A	125	58.00	b.6.1.1	111645
1kuh	132	58.61		
2ntoA	201	61.93		
1bqbA	301	62.28	d.92.1.2	58962
2aaxA	275	63.15		
2ckiA	262	65.58		
1mpuA	138	66.17	d.169.1.1	85040
1t07A	94	71.34	d.279.1.1	106196
1kapP	479	72.71	b.80.7.1,d.92.1.6	28012,40298
1pmyA	123	73.51	b.6.1.1	22888
1t7rA	269	73.55	a.123.1.1	106635
1gdvA	85	73.62	a.3.1.1	60458
1ymtA	246	75.41		
1pazA	123	76.30	b.6.1.1	22878
3c5tA	122	78.22		
1iab	200	80.03		
1pk5A	248	80.73	a.123.1.1	88139
1u4gA	301	82.11	d.92.1.2	107670
1nu4A	97	82.85	d.58.7.1	80731
2ax6A	256	83.89	a.123.1.1	127479