# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07268	d.92.1.14,d.166.1.1	123903,123904
2gdrA	202	10.71		
1zgyA	272	10.74	a.123.1.1	125064
2q22A	139	14.41		
1ezm	301	18.81		
2cz2A	223	23.34		
1nu4A	97	23.51	d.58.7.1	80731
2gpuA	230	25.77	a.123.1.1	135493
1njgA	250	28.26	c.37.1.20	85785
1pzlA	237	29.16	a.123.1.1	104393
1urnA	97	33.31	d.58.7.1	39153
1go7P	462	34.38	b.80.7.1,d.92.1.6	76245,76246
8tlnE	316	37.97	d.92.1.2	59075
1uzeA	589	38.34	d.92.1.5	108174
1kagA	173	38.40	c.37.1.2	72249
1fcyA	236	39.01	a.123.1.1	19282
2ebn	289	40.12		
1hq8A	123	41.16	d.169.1.1	61127
1u6bA	98	41.19	d.58.7.1	107703
1ymtA	246	41.29		
2g8lA	299	41.69	e.50.1.1	134775
1oiaA	95	41.70	d.58.7.1	87051
2aaxA	275	43.66		
1nq7A	244	44.12	a.123.1.1	92047
2ghpA	292	44.64	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1c7kA	132	46.17	d.92.1.1	59078
2h2tB	175	49.61		
2ejqA	130	50.52		
2ox9A	140	52.06		
1kapP	479	52.95	b.80.7.1,d.92.1.6	28012,40298
1ctjA	89	53.62	a.3.1.1	15798
1hg4A	279	53.89	a.123.1.1	19333
1ut8A	291	54.46	a.60.7.1,c.120.1.2	99908,99909
1t7rA	269	55.00	a.123.1.1	106635
1bqbA	301	56.44	d.92.1.2	58962
2ax6A	256	57.74	a.123.1.1	127479
1ew0A	130	59.24	d.110.3.2	40905
1upvA	257	62.42	a.123.1.1	113398
1iabA	200	63.51	d.92.1.8	40312
1mmqA	170	64.70	d.92.1.11	40396
1mpuA	138	64.77	d.169.1.1	85040
2bfdA	400	66.01		
1iae	200	67.20		
2e62A	61	67.63		
1iab	200	70.91		
1v9yA	167	71.02	d.110.3.2	108454
1opr	213	71.41		
2pigA	334	74.65		
1wlgA	299	75.94	b.152.1.1	114726
1lh0A	213	76.42	c.61.1.1	73896
1jk3A	158	77.89	d.92.1.11	66790
2aclB	244	79.94		
2jgzB	260	80.12		
1oo0B	110	80.13	d.58.7.1	87183
1jlwA	219	80.79	a.45.1.1,c.47.1.5	71741,71742
1kuh	132	80.92		
1sh0A	510	83.82	e.8.1.4	98876
1u4gA	301	84.50	d.92.1.2	107670
1wpoA	256	85.42	b.57.1.1	27012
1rdo1	113	85.53		
1gdvA	85	89.13	a.3.1.1	60458
1rwsA	77	89.50	d.15.3.2	97991